Locus 465

Sequence ID 3R_DroMel_CAF1
Location 1,751,803 – 1,751,896
Length 93
Max. P 0.978155
window753

overview

Window 3

Location 1,751,803 – 1,751,896
Length 93
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 86.31
Mean single sequence MFE -44.40
Consensus MFE -37.69
Energy contribution -39.19
Covariance contribution 1.50
Combinations/Pair 1.10
Mean z-score -2.43
Structure conservation index 0.85
SVM decision value 1.81
SVM RNA-class probability 0.978155
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1751803 93 - 27905053
AGGAGCCAUUG---------UUGGCCAGGUGA------AGCAGCAGCUGAAGUGGGUGGCGAAGGCGGGCGUGGUGGCUGCUCCUGCAGACUGUCACUUGGCUGGGCG
....(((....---------..(((((((((.------.((((...(((.((.(((..((.(..((....))..).))..))))).))).))))))))))))).))). ( -39.10)
>DroSec_CAF1 61299 99 - 1
AGGAGCCAUUG---------UUGGCCAGGUGGAGGCGGAGCAGCAGCUGAAGUGGGUGGCGAAGGCGGGCGCGGUGGCUGCUCCUGCAGACUGUCACUUGGCUGGGCG
....(((....---------..((((((((((..((((((((((.((((.....(.(.((....)).).).)))).)))))))).))......)))))))))).))). ( -47.60)
>DroSim_CAF1 63662 99 - 1
AGGAGCCAUUG---------UUGGCCAGGUGGAGGCGGAGCAGCAGCUGAAGUGGGUGGCGAAGGCGGGCGCGGUGGCUGCUCCUGCAGACUGUCACUUGGCUGGGCG
....(((....---------..((((((((((..((((((((((.((((.....(.(.((....)).).).)))).)))))))).))......)))))))))).))). ( -47.60)
>DroYak_CAF1 61090 102 - 1
AGGAGCCAUUGUUGGCAUUGUUGGCCAGGUGGAGGCGGAGCAGC-----AAGUGGGUGGUGGA-GCGGGCGUAAUGGCUGCUCCUGCAGAAUGUCACUUGGCUGGGCG
....((((....))))....(..(((((((((..((((((((((-----...((.((......-....)).))...)))))))).))......)))))))))..)... ( -43.30)
>consensus
AGGAGCCAUUG_________UUGGCCAGGUGGAGGCGGAGCAGCAGCUGAAGUGGGUGGCGAAGGCGGGCGCGGUGGCUGCUCCUGCAGACUGUCACUUGGCUGGGCG
....(((...............((((((((((..((((((((((.((((.....(.(.((....)).).).)))).)))))))).))......)))))))))).))). (-37.69 = -39.19 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:51 2006