Locus 4648

Sequence ID 3R_DroMel_CAF1
Location 12,237,327 – 12,237,426
Length 99
Max. P 0.666002
window7638

overview

Window 8

Location 12,237,327 – 12,237,426
Length 99
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 74.13
Mean single sequence MFE -23.47
Consensus MFE -7.95
Energy contribution -10.30
Covariance contribution 2.35
Combinations/Pair 1.00
Mean z-score -1.79
Structure conservation index 0.34
SVM decision value 0.28
SVM RNA-class probability 0.666002
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12237327 99 - 27905053
UCUU-----CUCCAUUAGACCUCAUAUUGUUUUGGAAAUGCUUAGGUUGAAAAUCAACCAAGUGGGCCAAGUGGCCUGGGCUUAUCUCUGGGUAUUC---AUUUU--UU
....-----.((((..((((........))))))))(((((((((((((.....)))))(((((((((....)))))..)))).....)))))))).---.....--.. ( -25.90)
>DroSec_CAF1 51120 105 - 1
UCUUACCUUAUUUAUUAGACCUCAUAUUGUAUUGGAAAUGCUUAGGUUGAAAAUCAACCAAGUGGGCCAAGUGGCCUGGACUUAUCUGUGGAUAUUA---AUUUU-UUU
........(((((((.(((....................((((.(((((.....)))))))))(((((....))))).......))))))))))...---.....-... ( -22.20)
>DroSim_CAF1 50832 105 - 1
UCUUACCUUAUCCAUUAGACCUCUUAUUGUAUUGGAAAUGCUUAGGUUGAAAAUCAACCAAGUGGGCCAAGUGGCCUGG-CUUAUCUGUGGAUAUUA---AUUUUUUUU
........(((((((.((.((..................((((.(((((.....)))))))))(((((....)))))))-)).....)))))))...---......... ( -27.40)
>DroEre_CAF1 52619 100 - 1
UCUCACCUUAUCCAGUAAGCCUCAUAUUCUAUGCCAAAUUCUUGAGGCAAAAACCAACCAAGUGGGCCAAGUGGCCUGAGCUUAUCA--GGCU------AUUAUU-UUU
.(((((.((((...))))((((((..................)))))).............)))))...((((((((((.....)))--))))------)))...-... ( -26.17)
>DroYak_CAF1 52672 91 - 1
CCUCACCUU-UCCAUUAGACCUCAUAUUGUAUUGUAAAUUCUUGAGGUGAAAAUCAACCAA--------------CUGAGCUUAGCU--GGGUACUAGUACUAUU-UUU
.........-...(((((((((((.(((........)))...))))))............(--------------((.(((...)))--.))).)))))......-... ( -15.70)
>consensus
UCUUACCUUAUCCAUUAGACCUCAUAUUGUAUUGGAAAUGCUUAGGUUGAAAAUCAACCAAGUGGGCCAAGUGGCCUGGGCUUAUCU_UGGAUAUUA___AUUUU_UUU
...................((..................((((.(((((.....)))))))))(((((....)))))............)).................. ( -7.95 = -10.30 +   2.35)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:32 2006