Locus 4644

Sequence ID 3R_DroMel_CAF1
Location 12,224,751 – 12,224,853
Length 102
Max. P 0.860724
window7633

overview

Window 3

Location 12,224,751 – 12,224,853
Length 102
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 88.33
Mean single sequence MFE -25.20
Consensus MFE -19.80
Energy contribution -20.04
Covariance contribution 0.24
Combinations/Pair 1.23
Mean z-score -1.89
Structure conservation index 0.79
SVM decision value 0.83
SVM RNA-class probability 0.860724
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12224751 102 + 27905053
UCAAAAUUUUCACGAAUUUAAUUUGCCGCAAGGGGAGUGGGAAACUGAAUGUGACUGGGCUGAAAGUUCAGUUACACAAAAAAAAUAAUUAACUUCGGACGG
.........((.((((.(((((((.((....)).))))((....))...(((((((((((.....))))))))))).............))).))))))... ( -27.70)
>DroSec_CAF1 38363 102 + 1
ACAAAAUUUUCACGAAUUUAAUUUGCCGCAAGCGGAGUGGGAAACUAAAUGUGGCUGGGCUGAAGGUUCAGUUACACAAAAAUAAUAAUUAAUUUAGGACGG
............((.(((((.(((.((((.......)))).))).)))))((((((((((.....))))))))))........................)). ( -22.60)
>DroSim_CAF1 38157 102 + 1
UCAAAAUUUUCACGAAUUUAAUUUGCCGCAAGCGGAGUGGGAAACUGAAUGUGGCUGGACUUAAGGUUCAGUUACACAAAAAUAAUAAUUAACUUCGAAAGG
............((((.((((((..(((....)))...((....))...(((((((((((.....)))))))))))..........)))))).))))..... ( -25.60)
>DroEre_CAF1 39383 102 + 1
UCAAAAUUUUCACAAAUUCAAUUUCCCGCAAACGGAGUGGGAAACUCGGUGUGGCUGGGCUGAAGGUUCAGUUACACAACAAAAAUAAUUAACUUCGGUCGG
.....................((((((((.......))))))))..((((((((((((((.....))))))))))))..............((....)))). ( -29.60)
>DroYak_CAF1 39012 102 + 1
UCAAAAUUUUCACAAAUUCAAUUUGCUGCAAAUGGAGUGGGAAACUGUGUUUGGCUGGGCUGAAGGUUCAGUUACACCACAAAAAUAAUUAACUUCGGUCGA
.....((((.(((((((...))))).)).))))(((((((....))(((..(((((((((.....)))))))))...)))...........)))))...... ( -20.50)
>consensus
UCAAAAUUUUCACGAAUUUAAUUUGCCGCAAGCGGAGUGGGAAACUGAAUGUGGCUGGGCUGAAGGUUCAGUUACACAAAAAAAAUAAUUAACUUCGGACGG
.........................(((....((((((((....))...(((((((((((.....)))))))))))...............))))))..))) (-19.80 = -20.04 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:27 2006