| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,219,886 – 12,219,980 |
| Length | 94 |
| Max. P | 0.596775 |
| Location | 12,219,886 – 12,219,980 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 70.63 |
| Mean single sequence MFE | -20.51 |
| Consensus MFE | -2.30 |
| Energy contribution | -3.14 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.11 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.596775 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12219886 94 + 27905053 GUUUUAAAAUGCAAAAAAAAAAAUAAGGGAAAUCCCA---AAACGG------AUCAACUUACAAAUAAUACAAAGUU-----GGGUGUGU------------UGUUUUAAUUUUCAAAAU ...(((((((................(((....))).---.((((.------((((((((............)))))-----.))).)))------------)))))))).......... ( -13.90) >DroSec_CAF1 33497 109 + 1 GUUGUAUAUUGCACAAAAUAACA-AGGGGAAACCCCA---AAACGG------AUCAACUUACAAAUAAUACAAAGUUAUGU-GGGUGUGUGAACCCACAAGCUGUUUUAAUUUGCAAAAU ........(((((..........-.(((....))).(---((((((------...(((((............))))).(((-((((......)))))))..)))))))....)))))... ( -29.90) >DroSim_CAF1 33272 108 + 1 GUUGUAUAUUGCAAAAAAUAACA-AGGGGAAAUCCCA---AAACGG------AUCAAUUUACGAAUAAUACAAAGUUAUGU-UGGUGUGGGAAUCCACAAGCUGUC-UAAUUUGCAAAAU ........(((((((........-..(((....))).---..((((------((((((..((............))...))-))))((((....))))...)))).-...)))))))... ( -22.20) >DroEre_CAF1 34434 111 + 1 GUUCGAUAUUGGAAA--AGUAUA-AGGGGAAGUCCAA---AAACGGAU---UAUCAACUUACAAGUAAUAUGAAGUUAUUUUGGGUGUGGGAAGCGACAAAUAGUUUUAAUUUGCAAAAU .(((.(((((.((((--....((-((..(((((((..---....))))---).))..))))....((((.....)))))))).))))).))).((((..............))))..... ( -17.74) >DroYak_CAF1 33972 117 + 1 GUUCUUCAAUGAGAA--AGCAUA-AGGUGAAAAUGGAAUUAAACAGAACUAAAUCAACUUACAAAUAGUAAGAAGUUCUUUUGCGUGAGGAAAACGACAAAAAGUUGUAAUCUGCAAAAU .(((((((....(((--((.((.-.(((.....((........))..))).......(((((.....)))))..)).)))))...))))))).(((((.....)))))............ ( -18.80) >consensus GUUCUAUAUUGCAAAAAAGAACA_AGGGGAAAUCCCA___AAACGG______AUCAACUUACAAAUAAUACAAAGUUAUGU_GGGUGUGGGAA_CCACAAACUGUUUUAAUUUGCAAAAU .(((((((((................(((....)))...................(((((............)))))......)))))))))............................ ( -2.30 = -3.14 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:25 2006