| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,750,832 – 1,750,937 |
| Length | 105 |
| Max. P | 0.665351 |
| Location | 1,750,832 – 1,750,937 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.61 |
| Mean single sequence MFE | -26.77 |
| Consensus MFE | -19.07 |
| Energy contribution | -19.63 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.665351 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1750832 105 - 27905053 GUUAACUAAACAAAUUUAUUAAUGUGAUAAUUGAGUUGCUGAUAACUUAGGAAGUUACAGCACUUUUAGUUAAACCUGUUGCAGAUCUAUAGAAUUUGCCUU---------------UGG .(((((((((........(((((......)))))..(((((.(((((.....))))))))))..))))))))).((....(((((((....).))))))...---------------.)) ( -22.40) >DroSec_CAF1 59965 120 - 1 GUUAACUAAACAAAUUCAUUAAUGUGAUAAUUGAGUUGCUUGUAACUUAGCAAGUCACACCACUUUUAGUUAACAUUGUUGCAGAUGUAUUGAAUUUGCCUUUGCAAGCCAAAGCUUUGG (((((((((((((..((((....))))...))).((.((((((......)))))).))......))))))))))....(((((((.(((.......))).))))))).((((....)))) ( -30.00) >DroSim_CAF1 62301 119 - 1 GUU-ACUAAACAAAUUCAUUAAUGUGAUAAUUGAGUUGCUGGUAGCUUAGCAAUUCACACCACUUUUAGUUAACAUUGUUGCAGAUGUAUUGAAUUUGCCUUUGCAAGUCAAAGCUUUGG (((-((((((.....((((....))))....(((((((((((....))))))))))).......))))).)))).......((((.((.((((.(((((....))))))))).)))))). ( -27.90) >consensus GUUAACUAAACAAAUUCAUUAAUGUGAUAAUUGAGUUGCUGGUAACUUAGCAAGUCACACCACUUUUAGUUAACAUUGUUGCAGAUGUAUUGAAUUUGCCUUUGCAAG_CAAAGCUUUGG ((((((((((............((((((..((((((((....))))))))...)))))).....))))))))))......((((((.......))))))..................... (-19.07 = -19.63 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:50 2006