Locus 4639

Sequence ID 3R_DroMel_CAF1
Location 12,205,418 – 12,205,531
Length 113
Max. P 0.865916
window7628

overview

Window 8

Location 12,205,418 – 12,205,531
Length 113
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 89.99
Mean single sequence MFE -35.57
Consensus MFE -31.21
Energy contribution -30.41
Covariance contribution -0.80
Combinations/Pair 1.14
Mean z-score -1.79
Structure conservation index 0.88
SVM decision value 0.85
SVM RNA-class probability 0.865916
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12205418 113 - 27905053
----UUUCUUUGCAGGCCCUAAAUGGAUUUCUAAUGAUACUGACAUGCGAAGGCGAAGUCUUCUUUGCCACGCACAGCAUCGAGAGCUAUUUGGGUUUUCAUCAGGUAAGUGC-CACC--
----......((.((((((.((((((...(((...(((.(((...((((..(((((((....))))))).))))))).))).))).)))))))))))).))...(((....))-)...-- ( -35.10)
>DroVir_CAF1 24931 120 - 1
CUUUUGUUCUUGCAGGCUCUAAAUGGAUUUCUAAUGAUACUGACAUGCGAAGGCGAGGUCUUCUUCGCCACGCACAGCAUCGAGAGCUAUUUGGGUUUUCAUCAGGUAAGUGGACAACAG
((.((((((((((.((((((...(((....))).((((.(((...((((..(((((((....))))))).))))))).))))))))))..((((.......)))))))))..))))).)) ( -36.30)
>DroGri_CAF1 27114 120 - 1
UUUUUGUUCUUGCAGGCUCUAAAUGGAUUUCUAAUGAUACUGACAUGCGAAGGCGAGGUCUUCUUUGCCACGCACAGCAUCGAGAGCUAUUUGGGUUUUCAUCAGGUAAGUGGACAACAA
...((((((((((.((((((...(((....))).((((.(((...((((..(((((((....))))))).))))))).))))))))))..((((.......)))))))))..)))))... ( -34.00)
>DroWil_CAF1 21926 113 - 1
----UCUUCUUCCAGGCCCUAAAUGGAUUUCUAAUGAUACUGACAUGCGAAGGCGAGGUCUUCUUUGCCACGCACAGCAUUGAGAGCUAUUUGGGUUUUCAUCAGGUAAGUGA-AGGU--
----(((((..((((((((.((((((.((((.((((...(((...((((..(((((((....))))))).))))))))))))))).))))))))))))......)).....))-))).-- ( -34.10)
>DroMoj_CAF1 27181 120 - 1
UUCUUGUUCUUGCAGGCUCUAAAUGGAUUUCUAAUGAUACUGACAUGCGAAGGCGAGGUCUUCUUUGCCACGCACAGCAUCGAGAGCUAUUUGGGUUUUCAUCAGGUAAGUGGACAAGAG
.((((((((((((.((((((...(((....))).((((.(((...((((..(((((((....))))))).))))))).))))))))))..((((.......)))))))))..))))))). ( -38.80)
>DroPer_CAF1 19343 111 - 1
----UUUCUUUGCAGGCCCUAAAUGGAUUUCUAAUGAUACUGACAUGCGAAGGCGAAGUCUUCUUUGCCACGCACAGCAUCGAGAGCUAUUUGGGUUUCCAUCAGGUAAGUGC-CA----
----......((.((((((.((((((...(((...(((.(((...((((..(((((((....))))))).))))))).))).))).)))))))))))).))...(((....))-).---- ( -35.10)
>consensus
____UGUUCUUGCAGGCCCUAAAUGGAUUUCUAAUGAUACUGACAUGCGAAGGCGAGGUCUUCUUUGCCACGCACAGCAUCGAGAGCUAUUUGGGUUUUCAUCAGGUAAGUGG_CAAC__
........(((((((((((.((((((...(((...(((.(((...((((..(((((((....))))))).))))))).))).))).)))))))))))).......))))).......... (-31.21 = -30.41 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:22 2006