| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,203,347 – 12,203,463 |
| Length | 116 |
| Max. P | 0.958823 |
| Location | 12,203,347 – 12,203,463 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 95.63 |
| Mean single sequence MFE | -55.38 |
| Consensus MFE | -49.64 |
| Energy contribution | -50.52 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.90 |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.958823 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12203347 116 + 27905053 GUUCUGCU---GCUGGAGCUUGCGUUUGCUGCGACAAGUGGAAAGGAAGUCGCGCAACUGCGUCUUGUAGCGGCGAUUUGGACGCGUUGGCGUCACCGGCGGCGGCAGAGCGUGGGCCG ((((((((---((((..((((((((.....))).))))).....(((((((((((.((........)).)).))))))).(((((....))))).))..))))))))))))........ ( -51.40) >DroSec_CAF1 17027 119 + 1 GUUCUGCUGCUGCUGCAGCUUGCGUUUGCUGCGACAAGUGGAGAGGAAGUCGCGCAACUGCGUCUUGUAGCGGCGAUUUGGACGCGUUGGCGUCACCGGCGGCGGCAGGGCGUGGGCCG (((((((((((((((((((........)))))............(((((((((((.((........)).)).))))))).(((((....))))).))))))))))))))))........ ( -56.20) >DroSim_CAF1 16495 119 + 1 GUUCUGCUGCUGCUGCAGCUUGCGUUUGCUGCGACAAGUGGAGAGGAAGUCGCGCAACUGCGUCUUGUAGCGACGAUUUGGACGCGUUGGCGUCACCGGCGGCGGCAGGGCGUGGGCCG (((((((((((((((((((........)))))............(((((((((((.((........)).))).)))))).(((((....))))).))))))))))))))))........ ( -56.20) >DroEre_CAF1 17760 119 + 1 AUUCUGCUGCUGCUGCAGCUUGCGUUUGCUGCGGCAGGUGGAGAGGAAGUCGCGCAACUGCGUCUUGUAGCGGCGAUUUGGACGCGUUGGCGUCACCGGAGGCGGCAGGGCGUGGGCCG ...((((((((((((((((........)))))))).(((.......(((((((((.((........)).)).))))))).(((((....))))))))...))))))))(((....))). ( -56.90) >DroYak_CAF1 17141 119 + 1 GUUCUGCUGCUGCUGCAGCUUGCGUUUGCUGCGGCAAGUGGAGAGGAAGUCGCGCAACUGCGUCUUGUAGCGGCGAUUUGGACGCGUUGGCGUCACCGGAGGCGGCAGGGCGUGGGACG (((((((((((((((((((........)))))))).........(((((((((((.((........)).)).))))))).(((((....))))).))...)))))))))))........ ( -56.20) >consensus GUUCUGCUGCUGCUGCAGCUUGCGUUUGCUGCGACAAGUGGAGAGGAAGUCGCGCAACUGCGUCUUGUAGCGGCGAUUUGGACGCGUUGGCGUCACCGGCGGCGGCAGGGCGUGGGCCG ((((((((((((((...((((((((.....))).))))).....(((((((((((.((........)).))).)))))).(((((....))))).))))))))))))))))........ (-49.64 = -50.52 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:21 2006