Locus 4632

Sequence ID 3R_DroMel_CAF1
Location 12,183,572 – 12,183,683
Length 111
Max. P 0.531008
window7614

overview

Window 4

Location 12,183,572 – 12,183,683
Length 111
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 86.64
Mean single sequence MFE -24.61
Consensus MFE -16.13
Energy contribution -17.57
Covariance contribution 1.44
Combinations/Pair 1.29
Mean z-score -1.64
Structure conservation index 0.66
SVM decision value -0.01
SVM RNA-class probability 0.531008
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12183572 111 - 27905053
AAUGUUAAAUAUAAGCCUUAGAUCUUUAAAAUCGGAGUAUGAAUAGGGCGCUGGAUACGACCUACUAAACUUCCUGGUCUGAUUUAAGCAUGACCUAAUGAGGUAUUUAAU
...(((((((((...(.((((.((....((((((((.((.(((((((.((.......)).))))......))).)).))))))))......)).)))).)..))))))))) ( -22.40)
>DroSim_CAF1 8723 111 - 1
AAUGUUAAAUAUAAACCUCAGAUCUUUAAAAUCGGAUUUUAAAUAGGGCGCUGGAUGCCACCUACUAAACUUCCUGGCCUGAUUUAAGCAUGCCCUAAUGAGGUAUUUAAU
...(((((((....(((((((((((........))))).....(((((((((((((((((..............))))...)))).)))..)))))).))))))))))))) ( -26.24)
>DroEre_CAF1 7569 111 - 1
AAUGUUAAAUAUAAACCUUAGAUCUUACAAAUCUGAGUAUUAAUAGGGCACUGGAUACGAACUACUAAGCUUCCUGGCCCGAUUUAAGCAUGCCCCAAAGGGGUAUAUAAU
....((((((.(((..(((((((.......)))))))..)))...((((...(((..(..........)..)))..)))).))))))..(((((((...)))))))..... ( -28.50)
>DroYak_CAF1 8147 111 - 1
AAUGUGAAAUAUAAACCUUAGAUCUUAAAAAUCGGAGUAUUAAUAGGGCGCUGGACACCACCUACUAAGCUUCCUGACCCGAUUUAUGCAUGCCCCAAUAAGGCACAUAAU
..((((......................(((((((.((.....(((((.(((((......)).....))).)))))))))))))).....((((.......)))))))).. ( -21.30)
>consensus
AAUGUUAAAUAUAAACCUUAGAUCUUAAAAAUCGGAGUAUUAAUAGGGCGCUGGAUACCACCUACUAAACUUCCUGGCCCGAUUUAAGCAUGCCCCAAUGAGGUAUAUAAU
.........((((.(((((((((.......)))...((((((((.((((...(((................)))..)))).)))))))).........)))))).)))).. (-16.13 = -17.57 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:09 2006