Locus 463

Sequence ID 3R_DroMel_CAF1
Location 1,750,080 – 1,750,179
Length 99
Max. P 0.601853
window751

overview

Window 1

Location 1,750,080 – 1,750,179
Length 99
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 78.26
Mean single sequence MFE -22.08
Consensus MFE -13.69
Energy contribution -13.58
Covariance contribution -0.11
Combinations/Pair 1.11
Mean z-score -1.44
Structure conservation index 0.62
SVM decision value 0.14
SVM RNA-class probability 0.601853
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1750080 99 - 27905053
UCCGC---CCUUAAAACCGCCCGCCCUC----UGGCUGGCUAUCUAC--------GCCGUCGCGUUCUUGUCUGUUAUCAAUAUGCACUCGCAUUAAGUGAGUUUAUAUGCGAU
..(((---......(((.(((.(((...----.))).))).....((--------((....))))........)))....(((((.((((((.....)))))).)))))))).. ( -25.80)
>DroPse_CAF1 50754 96 - 1
GCCUC----------CCCACCCACUCCCCAGCAUCCACGCUAUCUGU--------GCUGUCGCGUCCUUGUCUCUUAUCAAUAUGCACUCGCAUUAAGUGAGUUUAUAUGCGAU
.....----------.............((((((...........))--------))))((((.....((........))(((((.((((((.....)))))).))))))))). ( -19.30)
>DroSec_CAF1 59209 99 - 1
ACCGC---CCAUAAUCCCGUCCGCCCCC----UGGCUGGCUAUCUAC--------GCCGUCGCGUCCUUGUCUCUUAUCAAUAUGCACUCGCAUUAAGUGAGUUUAUAUGCGAU
..(((---..........(((.(((...----.))).))).....((--------((....))))...............(((((.((((((.....)))))).)))))))).. ( -22.90)
>DroSim_CAF1 61543 99 - 1
ACCGC---CCAUAAUCCCGCCCGCCCCC----UGGCUGGCUAUCUAC--------GCCGUCGCGUCCUUGUCUCUUAUCAAUAUGCACUCGCAUUAAGUGAGUUUAUAUGCGAU
..(((---..........(((.(((...----.))).))).....((--------((....))))...............(((((.((((((.....)))))).)))))))).. ( -25.60)
>DroYak_CAF1 59220 105 - 1
UCCGUAAUCCACAAUCCCGCCCGCUCCC---------GGCUAUCUACUCCUUGUCGCUAUCGCGUCCCUGUCUCUUAUCAAUAUGCACUCGUAUUAAGUGAGUUUAUACGCGAU
((((((............(((.......---------))).....((((((((.(((....))).).............((((((....))))))))).))))...)))).)). ( -16.50)
>DroAna_CAF1 54443 97 - 1
ACCGC---CCAUCACUGCCUCCAUCAC------GCCACAGUAUCUGC--------UCUGUCGCGUCCUUGUCUCUUAUCAAUAUGCACUCGCAUUAAGUGAGUUUAUAUGCGAU
..(((---.............((..((------((.((((.......--------.)))).))))...))..........(((((.((((((.....)))))).)))))))).. ( -22.40)
>consensus
ACCGC___CCAUAAUCCCGCCCGCCCCC____UGGCUGGCUAUCUAC________GCCGUCGCGUCCUUGUCUCUUAUCAAUAUGCACUCGCAUUAAGUGAGUUUAUAUGCGAU
..........................................................(((((.....((........))(((((.((((((.....)))))).)))))))))) (-13.69 = -13.58 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:49 2006