Locus 4626

Sequence ID 3R_DroMel_CAF1
Location 12,173,152 – 12,173,260
Length 108
Max. P 0.985383
window7604

overview

Window 4

Location 12,173,152 – 12,173,260
Length 108
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 76.37
Mean single sequence MFE -25.20
Consensus MFE -15.68
Energy contribution -15.69
Covariance contribution 0.01
Combinations/Pair 1.38
Mean z-score -2.45
Structure conservation index 0.62
SVM decision value 2.00
SVM RNA-class probability 0.985383
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12173152 108 - 27905053
UCC------------GCUACAGAUUCUCGGUGAACUUUGUCAACAGUCCGGACUGCACGGACAACAUCACAUACCACUUCAAGGUGGUGAUUCCCACACAGACGAUUAUCGAGAAUUAUA
...------------......((((((((((((...(((((....(((((.......))))).........(((((((....)))))))...........)))))))))))))))))... ( -35.90)
>DroPse_CAF1 88759 120 - 1
UCCUCUCCAUCUCUCUCUACAGAUUCUCGGUGAACUUUGUGAACAGUCCAGUCUGUACAGACAACAUCACAUAUCACUUCAAAGUGGUGAUCCCCACACAGACGAUCAUCGAGAACUACA
....................((.((((((((((.(((((((.........((((....))))..((((((.............)))))).......)))))).).))))))))))))... ( -30.92)
>DroGri_CAF1 107173 108 - 1
UCU------------UUUACAGAUUUUCCAUAAAUUUCGUAAACAGUCCCAACUGCACAGACAACAUAACGUAUCAUUUUAAAGUUAGGAUACCGACACAGACAAUCAUCGAGAACUACA
(((------------(((((((((((.....)))))).))))...((((.((((.........((.....))..........)))).))))...................))))...... ( -10.41)
>DroWil_CAF1 98508 109 - 1
UCC-----------ACCCACAGGUUCUCGGUAAAUUUUGUCAACGAUCCAACCUGCACAGACAACAUCACGUAUCAUUUUAAGGUACUGGUACGCCUACAGACCAUUAUUGAGAACUACA
...-----------.......((((((((((((..(((((...((..(((((((.........((.....)).........))))..)))..))...)))))...))))))))))))... ( -22.67)
>DroMoj_CAF1 107674 108 - 1
UCA------------UUUACAGAUUCUCGAUCAAUUUCGUAAACAGUCCCAGCUGCACAGACAACAUAACAUAUCAUUUUAAAGUUAGGGUACCCGCACAGACGAUCGUCGAGAAUUACA
...------------......((((((((((.....((((...((((....))))............................((..((....))..))..))))..))))))))))... ( -20.40)
>DroPer_CAF1 86793 120 - 1
UCCUCUCCAUCUCUCUCUACAGAUUCUCGGUGAACUUUGUGAACAGUCCAGUCUGUACAGACAACAUCACAUAUCACUUCAAAGUGGUGAUCCCCACACAGACGAUCAUCGAGAACUACA
....................((.((((((((((.(((((((.........((((....))))..((((((.............)))))).......)))))).).))))))))))))... ( -30.92)
>consensus
UCC____________UCUACAGAUUCUCGGUGAACUUUGUAAACAGUCCAAACUGCACAGACAACAUCACAUAUCACUUCAAAGUGGUGAUACCCACACAGACGAUCAUCGAGAACUACA
....................((.((((((((((..(((((...(((......))).........((((((.............))))))........)))))...))))))))))))... (-15.68 = -15.69 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:59 2006