| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,161,306 – 12,161,406 |
| Length | 100 |
| Max. P | 0.975530 |
| Location | 12,161,306 – 12,161,406 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 89.59 |
| Mean single sequence MFE | -41.93 |
| Consensus MFE | -35.93 |
| Energy contribution | -36.68 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.71 |
| Structure conservation index | 0.86 |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.975530 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12161306 100 - 27905053 AAUCGGCCGGGAGGCGUGUACCAUGGGGCACGCGUU-UGGGGCGCCGUUUAAUUGCGGUGCGCGAUUUGCAAGCGUUUUUAAACGCCUCAAUUUGCAUUUG-------------- ......((.(((.(((((..(....)..))))).))-).))(((((((......)))))))((((.(((...(((((....)))))..))).)))).....-------------- ( -41.70) >DroSec_CAF1 67970 100 - 1 AAUCGGCCAGGAGGCGUGUUCCAUGGGGCACGCGUU-UGGGGCGCCGUUUAAUUGCGGUGCGCGAUUUGCAAGCGUUUUUAAACGCCUCAAUUUGCAUUUG-------------- ......((..((.((((((((....)))))))).))-..))(((((((......)))))))((((.(((...(((((....)))))..))).)))).....-------------- ( -42.80) >DroSim_CAF1 68386 100 - 1 AAUCGGCCGGGAGGCGUGUUCCAUGGGGCACGCGUU-UGGGGCGCCGUUUAAUUGCGGUGCGCGAUUUGCAAGCGUUUUUAAACGCCUCAAUUUGCAUUUG-------------- ......((.(((.((((((((....)))))))).))-).))(((((((......)))))))((((.(((...(((((....)))))..))).)))).....-------------- ( -44.30) >DroEre_CAF1 68927 100 - 1 AAUCGGCAGGGAGGCGUGUUCCAUGGGGCACGCGUU-UGGGGCGCCGUUUAAUUGCGGUGCGCGAUUUGCAAGCGUUUUUAAACGCCUCAAUUUGCAUUUG-------------- .....((((.(((((((((((....))))))(((..-(.(.(((((((......))))))).).)..)))..............)))))...)))).....-------------- ( -42.00) >DroYak_CAF1 80155 100 - 1 AAUCGCCAGGGAGGCGUUUUCCAUGGGGCACGCGUU-UGGGGCGCCGUUUAAUUGCGGUGCGCGAUUUGCAAGCGUUUUUAAACGCCUUAAUUUGCAUUUG-------------- ....((....(((((((((.....((.((..(((..-(.(.(((((((......))))))).).)..)))..)).))...))))))))).....)).....-------------- ( -37.20) >DroAna_CAF1 68671 115 - 1 AAUCGCCCAGGAGGCGGGCUGGAUGGGGCACGCGUUUUUGGGCGCCGUUUAAUUGCGGCGCGCGAUUUGUACGCGAUUUUAAACGCCUCAAUUUGCAUUUCUCGGCAGUCGUUAG ....(((.(((((....((..(.((((((.(((((..(((.(((((((......))))))).))).....))))).........)))))).)..)).))))).)))......... ( -43.60) >consensus AAUCGGCCGGGAGGCGUGUUCCAUGGGGCACGCGUU_UGGGGCGCCGUUUAAUUGCGGUGCGCGAUUUGCAAGCGUUUUUAAACGCCUCAAUUUGCAUUUG______________ ......((..((.((((((((....)))))))).))...))(((((((......)))))))((((.(((...(((((....)))))..))).))))................... (-35.93 = -36.68 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:53 2006