Locus 4622

Sequence ID 3R_DroMel_CAF1
Location 12,157,248 – 12,157,343
Length 95
Max. P 0.678218
window7596

overview

Window 6

Location 12,157,248 – 12,157,343
Length 95
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 82.89
Mean single sequence MFE -28.02
Consensus MFE -17.99
Energy contribution -19.05
Covariance contribution 1.06
Combinations/Pair 1.13
Mean z-score -2.35
Structure conservation index 0.64
SVM decision value 0.30
SVM RNA-class probability 0.678218
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12157248 95 + 27905053
ACUGACUUGAGGUGAGCAGUUGUUUUCUUGUUUUAACGACUUUACUGCUGCCACGCUGCGUAUGCGCAAUGCACAC-----C-GUCCCCUUAAGAAGUUAA
(((..(((((((((.(((((.((....((((....))))....)).))))))))((((((....))))..))....-----.-.....)))))).)))... ( -26.40)
>DroPse_CAF1 71257 90 + 1
ACUGGAUUU------GUAGUU--UGUAUUUUUUUUACGACUUUACUGCA---ACGCUGCGUAUGCGCAAUGCCCCCACCCCCAGCCCAUUGGGGAAGAGAC
..(((..((------((((((--((((.......)))))....))))))---).((((((....))))..))..))).((((((....))))))....... ( -24.30)
>DroSec_CAF1 63946 95 + 1
ACUGACUUCAGUUGAGCAGUUGUUUUCUCGUUUUUACGACUUUACUGCCGCCACGUUGCGUAUGCGCAAUGCACAC-----C-GCCCCCUUAAGAAGUUAA
..(((((((.(.((.(((((.......((((....))))....))))))).).(((((((....))))))).....-----.-..........))))))). ( -25.60)
>DroSim_CAF1 64347 95 + 1
ACUGACUUCAGGUGAGCAGUUGUUUUCUCGUUUUUACGACUUUACUGCCGCCACGUUGCGUAUGCGCAAUGCACAC-----C-GCCCCCUUAAGAAGUUAA
..(((((((.((((.(((((.......((((....))))....))))))))).(((((((....))))))).....-----.-..........))))))). ( -32.50)
>DroEre_CAF1 64308 95 + 1
ACUGACUUCAGGUGAGCAGUUGUUUUCUCGUUUUUACGACUUUACUGCAGCCACGUUGCGUAUGCGCAAUGCUCAC-----C-GUCCCCUUUGAAAGUUAA
..(((((((((((((((.(((((....((((....)))).......)))))...((((((....))))))))))))-----)-........)).)))))). ( -29.40)
>DroYak_CAF1 76158 95 + 1
ACUGCCUUCAGGUGAGCAGUUGUUUUCUCGUUUUUACGACUUUACUGCAGCCACGUUGCGUAUGCGCAAUGCUCAC-----C-GGCCUCUUUAGAAGUUAA
...(((....(((((((.(((((....((((....)))).......)))))...((((((....))))))))))))-----)-)))............... ( -29.90)
>consensus
ACUGACUUCAGGUGAGCAGUUGUUUUCUCGUUUUUACGACUUUACUGCAGCCACGUUGCGUAUGCGCAAUGCACAC_____C_GCCCCCUUAAGAAGUUAA
..(((((((......(((((.......((((....))))....))))).....(((((((....)))))))......................))))))). (-17.99 = -19.05 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:52 2006