Locus 4620

Sequence ID 3R_DroMel_CAF1
Location 12,151,950 – 12,152,059
Length 109
Max. P 0.599722
window7594

overview

Window 4

Location 12,151,950 – 12,152,059
Length 109
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.30
Mean single sequence MFE -22.70
Consensus MFE -18.42
Energy contribution -18.10
Covariance contribution -0.32
Combinations/Pair 1.26
Mean z-score -1.46
Structure conservation index 0.81
SVM decision value 0.13
SVM RNA-class probability 0.599722
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12151950 109 - 27905053
UGUCAUCCACCCAUUGAGUAUCAUAGAUAACCUGAAA-------GAUUAUUAACACAUUUUAUACAUUUCUUUUGUAAGAAGUCUAAGAAAUUAGAA----ACCUGGAUGGCAAUGCCCA
(((((((((............................-------......................((((((....))))))(((((....))))).----...)))))))))....... ( -20.10)
>DroSec_CAF1 58580 108 - 1
UGUCAUCCACCCAUUGAGUGUCAUAGAUAACCUGAAA-------GAUUAUUAGCACACUUUAUACGUUUCUU-UAUAAGAAGUCUAAUAAAUUAGAA----ACCUGGAUGGCAAUACCCA
(((((((((...((.((((((....(((((.(.....-------).)))))...)))))).))..(((((((-(((.((....)).))))...))))----)).)))))))))....... ( -23.80)
>DroSim_CAF1 58974 108 - 1
UGUCAUCCACCCAUUGAGUGUCAUAGAUAACCUGAAA-------CAUUAUUAGCACAUUUUAUACGUUUCUU-UAUAAGAAGUCUAAUGGAUUAGAA----ACCUGGAUGGCAAUGCCCA
(((((((((.......(((((..(((.....)))..)-------))))(((((.((.(((((((........-))))))).))))))).........----...)))))))))....... ( -23.10)
>DroEre_CAF1 58646 112 - 1
UGUCAUCCACCCAUUGAGUGUCAUAGAUAACCUGAAA-------GAUUAUUGGCACAUUUUAAACGUUUCUU-UAUAAGAAGUCCAAAGAUUUAGUAACCAACCUGGAUGGCGAUGCCCA
.((((((((........((((((...((((.(.....-------).))))))))))................-..((..(((((....)))))..)).......))))))))........ ( -20.70)
>DroYak_CAF1 70561 115 - 1
UGUCAUCCACCCAUUGAGUGUCAUAGAUAACCUGAAAUUAUUAGCAUUAUUGGCACAUUUUAAACGUUUCUC-UAUAAGAAGUCUAAUGAUUUAGGA----ACCUGGAUGGCAAUGCCCA
(((((((((........((((((..(((...((((.....)))).)))..)))))).........((((((.-......(((((....)))))))))----)).)))))))))....... ( -25.81)
>consensus
UGUCAUCCACCCAUUGAGUGUCAUAGAUAACCUGAAA_______GAUUAUUAGCACAUUUUAUACGUUUCUU_UAUAAGAAGUCUAAUGAAUUAGAA____ACCUGGAUGGCAAUGCCCA
(((((((((....((.((((((...))))..)).))..........(((((((.((.(((((((.(.....).))))))).)))))))))..............)))))))))....... (-18.42 = -18.10 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:50 2006