Locus 4614

Sequence ID 3R_DroMel_CAF1
Location 12,131,748 – 12,131,845
Length 97
Max. P 0.518025
window7585

overview

Window 5

Location 12,131,748 – 12,131,845
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 95.05
Mean single sequence MFE -31.96
Consensus MFE -25.96
Energy contribution -26.72
Covariance contribution 0.76
Combinations/Pair 1.03
Mean z-score -1.44
Structure conservation index 0.81
SVM decision value -0.03
SVM RNA-class probability 0.518025
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12131748 97 + 27905053
AGCCAAGAGAGCUGCUUGUUUUCGACCACAAGUGGUCAGAGAGGAGAGCCGGAGCCCGCAGUCUUUUAGCUGGUUCGGGAGAUCUGUGGAAAACCAA
..(((.....(((.(((.(((..(((((....)))))..))).))))))((((.((((((((......))))...))))...)))))))........ ( -32.60)
>DroSec_CAF1 38084 97 + 1
AGCCAAGAGAGCUGCUUGUUUUCGACCACAAGUGGUCAGAGAGGAGAGCCGGAGCCCAGAGUCUUUUAGCUGGUUCGGGAGAUCUGUGGAAAACCAA
..(((.....(((.(((.(((..(((((....)))))..))).))))))((((.(((.((..(........)..)))))...)))))))........ ( -31.40)
>DroSim_CAF1 37831 97 + 1
AGCCAAGAGAGCUGCUUGUUUUCGACCACAAGUGGUCAGAGAGGAGAGCCGGAGCCCGGAGUCUUUUAGCUGGUUCGGGAGAUCUGUGGAAAACCAA
..(((.....(((.(((.(((..(((((....)))))..))).))))))((((.((((((.((........))))))))...)))))))........ ( -32.60)
>DroEre_CAF1 38174 95 + 1
AGCCAAGAGAGCUGCUUGUUUUCGACAACAAGUGGUCAGAGAAGAGAGCCGGAGUCCGGAGUCUUUUAGCUGGUUCGGGAGAUCUGUGGAAAUCC--
..(((..(((((..((((((......))))))..))(((..((((((.((((...))))..))))))..)))..((....))))).)))......-- ( -29.90)
>DroYak_CAF1 47129 97 + 1
AGGCAAGAGAGCUGCUUGCUUACGACCACAAGUGGUCAGAGAGGAGAGCCGGAGUCCGGAGUCUUUUAGCUGGUUCGGGAGAUCUGUGGAAAUCCAA
(((((((.......)))))))..(((((....))))).....(((...(((.(((((.((..(........)..)).)))...)).)))...))).. ( -33.30)
>consensus
AGCCAAGAGAGCUGCUUGUUUUCGACCACAAGUGGUCAGAGAGGAGAGCCGGAGCCCGGAGUCUUUUAGCUGGUUCGGGAGAUCUGUGGAAAACCAA
..(((.....(((.(((.(((..(((((....)))))..))).))))))((((.((((((.((........))))))))...)))))))........ (-25.96 = -26.72 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:41 2006