Locus 4611

Sequence ID 3R_DroMel_CAF1
Location 12,121,503 – 12,121,595
Length 92
Max. P 0.500000
window7579

overview

Window 9

Location 12,121,503 – 12,121,595
Length 92
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 83.11
Mean single sequence MFE -11.02
Consensus MFE -7.43
Energy contribution -7.77
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.65
Structure conservation index 0.67
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12121503 92 + 27905053
UUCACUUUGAAGAGCGUACUUCUGAUAGCUAUACAAUUAGUAAGUACUACCACAAAA------AAAUCCACCAA-----AAACAAAGUUAAACAACGAAGCAU
.............(((((((((((((.(.....).))))).))))))..........------...........-----.......(((....)))...)).. ( -11.00)
>DroSim_CAF1 27468 91 + 1
UUCACUUUGAAGAGCGUACUUCUGAUAGCUAUACAAUUAGUAAGUACUACCACAAAA------AAAUCCACCAA------AACAAAGUUAAACAACGAAGCAU
.............(((((((((((((.(.....).))))).))))))..........------...........------......(((....)))...)).. ( -11.00)
>DroEre_CAF1 27127 92 + 1
UUCACUUUGAAGAGCGUACUUCUGAUAGCUAUACAAUUAGUAAGUACUACCACAACA------AAAUCCACCAA-----AUACAAAGUUAAACAACAAAGCAU
.............(((((((((((((.(.....).))))).))))))..........------...........-----.......(((....)))...)).. ( -11.00)
>DroWil_CAF1 31956 103 + 1
UUCACUUUGAAGACCGUACUACUGAUAGCUAUACAAUUAGUAAGUACAAAAACAACAAUAAACAAAAAAGAAAAACACCAUUCAAAUUUAAACCACUACCAAA
.....((((((....(((((((((((.(.....).)))))).)))))......................(........).))))))................. ( -10.60)
>DroYak_CAF1 32017 92 + 1
UUCACUUUGAAGAGCGUACUUCUGAUAGCUAUACAAUUAGUAAGUACUACCACAACA------AAAUCCACAAA-----AACCAAAGUUAAACAACGAAGUAU
...((((((......(((((((((((.(.....).))))).))))))..........------...........-----(((....)))......)))))).. ( -13.10)
>DroAna_CAF1 23153 91 + 1
UUCACUUUGAAGAGCGUACUACUGAUAGCUAUACAAUUAGUAAGUACAACCACAAAAA-----AAAACCACCAC-----AAACCACUUUAAACACGGCAGA--
...............(((((((((((.(.....).)))))).)))))...........-----...........-----......................-- (  -9.40)
>consensus
UUCACUUUGAAGAGCGUACUUCUGAUAGCUAUACAAUUAGUAAGUACUACCACAAAA______AAAUCCACCAA_____AAACAAAGUUAAACAACGAAGCAU
...............(((((((((((.(.....).))))).))))))........................................................ ( -7.43 =  -7.77 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:35 2006