| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,116,981 – 12,117,082 |
| Length | 101 |
| Max. P | 0.849772 |
| Location | 12,116,981 – 12,117,082 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 81.07 |
| Mean single sequence MFE | -26.54 |
| Consensus MFE | -15.34 |
| Energy contribution | -15.53 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.849772 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12116981 101 + 27905053 UUCUUUGCUCAUUU----UUAUAGGCGCCUUGCGUGGGCGUUUCUCAUUUAAUU--UGGGAACUUU---CGCUUUAUUUUUGUUUAGCG--UAGCACGCCCUUUAUAAA--AU-U ............((----((((((((((...))))((((((((((((.......--))))))((..---((((..((....))..))))--.)).)))))).)))))))--).-. ( -26.30) >DroPse_CAF1 26675 106 + 1 UUCUUUCUCUCUUU----UUAUGGGCGCUUUGCGUGGGCGUUUCUCGUUUAAUU--UGGGAACUUUUCUCAGUUUAUUUCUGUUUUCCA--UAGCACGCCCUUAAAAAAGAAA-U .........(((((----((..(((((...((((((((((.....))).(((.(--(((((.....)))))).)))..........)))--).))))))))...)))))))..-. ( -26.60) >DroSec_CAF1 23065 105 + 1 UUCUUGGCUCAUUGGCGCAUAUAAACGCCUUGCGUGGGCGUUUCUCAUUUAAUU--UGGGAACUUU---CGCUUUAUUUUUGUUUAGCG--UAGCACGCCCUUUAUAUA--AA-U ......((.((..((((........)))).)).))((((((((((((.......--))))))((..---((((..((....))..))))--.)).))))))........--..-. ( -27.70) >DroEre_CAF1 22615 101 + 1 UUCUUGGCUCAUUU----UUAUGGCCGCCUUGCGUGGGCGUUUCUCAUAUAAUU--UGAGAACUGU---CGCUUUAUUUUUGUUAAGCA--UAGCACGCCCUUUAUAAA--AA-U .....(((.(((..----..)))))).....(((((((((.((((((.......--)))))).)))---)((((.((....)).)))).--...)))))..........--..-. ( -27.80) >DroYak_CAF1 27626 101 + 1 UUCUUGGCUCAUUU----UUAUGGGCGCCUUGCGUGGGCGUUUCUCAUUUAAUU--UUGGAACUGU---CGCUUUAUUUUUGUUAGGCG--UAGCACGCCCUUUAUAAA--AG-U ..........((((----((((((((((...))))(((((((((.((.......--.)))))(((.---(((((.((....)).)))))--))).)))))).)))))))--))-) ( -25.20) >DroAna_CAF1 19159 105 + 1 UUCUUGCCGCGU-U----UUAUGGGCCCAUUGCGUGGGCGUUUCUCGUUUCAUUUUUGGGAACUUU---UAUUUUAUUUUUGUUUAGCGCGAGGCACGCCCUUAAAAAA--AUGU ........((((-.----..(((....))).))))((((((.((((((.(((....)))((((...---............))))...)))))).))))))........--.... ( -25.66) >consensus UUCUUGGCUCAUUU____UUAUGGGCGCCUUGCGUGGGCGUUUCUCAUUUAAUU__UGGGAACUUU___CGCUUUAUUUUUGUUUAGCG__UAGCACGCCCUUUAUAAA__AA_U ........................((((...))))((((((((((((.........))))))........................((.....)))))))).............. (-15.34 = -15.53 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:31 2006