| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,109,903 – 12,110,013 |
| Length | 110 |
| Max. P | 0.566017 |
| Location | 12,109,903 – 12,110,013 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 81.22 |
| Mean single sequence MFE | -21.46 |
| Consensus MFE | -16.14 |
| Energy contribution | -16.80 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.566017 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12109903 110 - 27905053 GUAUUUAUGGGGGCGCCUCAAUGGCCGAUUGACCUUUGCAUGUUAGAUUAACAUUGAAUAUGAAAUCGAAUACACCACACCACCUCCCCCUCCCACCAUCCAGCAG-UCAC ........(((((.(((.....)))(((((.........((((((...)))))).........))))).................)))))................-.... ( -20.67) >DroSec_CAF1 15976 105 - 1 GUAUUUAUGGGGGCGCCUCAAUGGCCGAUUGACCUUUGCAUGUUAGAUUAACAUUGAAUAUGAAAUCGAAUACACCACACU-CCCCUCCCUCCCACCUAC----UC-ACAC .......((((((.(((.....)))(((((.........((((((...)))))).........))))).............-.......)))))).....----..-.... ( -19.07) >DroSim_CAF1 15900 102 - 1 GCAUUUAUGGGGGCGCCUCAAUGGCCGAUUGACCUUUGCAUGUUAGAUUAACAUUGAAUAUGAAAUCGAAUACA---CACU-CCCCUCCCUCCCACCAAC----UC-ACAC .......((((((.(((.....)))(((((.........((((((...)))))).........)))))......---....-.......)))))).....----..-.... ( -19.07) >DroEre_CAF1 15506 101 - 1 GUAUGUAUGGGGGCGCCUCAAUGGCCGAUUGACCUUUGCAUGUUAGAUUAACAUUGAAUAUGAAAUCGAAUACACCCCACC------ACAUCCCACCUAC----UAAACAC ..((((.(((((..(((.....)))(((((.........((((((...)))))).........)))))......)))))..------)))).........----....... ( -21.57) >DroYak_CAF1 20098 96 - 1 ----GUAUGGGGGCGCCUCAAUGGCCGAUUGACCUUUGCAUGUUAGAUUAACAUUGAAUAUGAAAUCGAAUACACCCUACC------CCCUCCCACCUAC----UA-AUAC ----....(((((.(((.....)))(((((.........((((((...)))))).........)))))...........))------)))..........----..-.... ( -21.07) >DroAna_CAF1 13534 83 - 1 ---UCUGUGGGAGCGCCUCAAUGGCCGAUUGACCUUUGCAUGUUAGAUUAACAUUGAAUAUGCAAUCCAAU-CACCGCC---------CAGCCCAC--------------- ---...(((((.(((((.....))).(((((....(((((((((.(((....))).)))))))))..))))-)...)).---------...)))))--------------- ( -27.30) >consensus GUAUUUAUGGGGGCGCCUCAAUGGCCGAUUGACCUUUGCAUGUUAGAUUAACAUUGAAUAUGAAAUCGAAUACACCACACC______CCCUCCCACCUAC____UA_ACAC .......((((((.(((.....)))(((((.........((((((...)))))).........))))).....................))))))................ (-16.14 = -16.80 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:28 2006