Locus 4605

Sequence ID 3R_DroMel_CAF1
Location 12,104,991 – 12,105,103
Length 112
Max. P 0.904699
window7568

overview

Window 8

Location 12,104,991 – 12,105,103
Length 112
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 91.96
Mean single sequence MFE -21.89
Consensus MFE -18.18
Energy contribution -18.78
Covariance contribution 0.60
Combinations/Pair 1.17
Mean z-score -1.70
Structure conservation index 0.83
SVM decision value 1.04
SVM RNA-class probability 0.904699
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12104991 112 + 27905053
CCUUCGCCUCAAGAUUGUCAGUCAUGUAUGUAAUUCUUCUACUUUACACUCUUGUCUACUGAUAAUUAAGCACCAACUGGUUUUUCCAUAUACCAUUGAUUUUGUUCUUGUA
.........(((((((((((((((.(..(((((..........)))))..).))...))))))))........(((.((((..........))))))).......))))).. ( -17.50)
>DroSec_CAF1 10954 112 + 1
CCUUCGCCGCAAGAUUGUCAGUCAUGUGUGUAAUUCGUCUACUUUACACUCAUGUCUACUGAUAAUUAAGCACCAACUGGUUUUUCCUUGUGCCAUUGAUUUUGUUCUUGUA
........((((((((((((((((((.((((((..........)))))).))))...))))))))....((((.....((.....))..))))............)))))). ( -28.80)
>DroSim_CAF1 10891 112 + 1
CCUUCGCCGCAAGAUUGUCAGUCAUGUAUGUAAUUCGUCUACUUUACACUCAUGUCUACUGAUAAUAGGGCACCAACUGGUUUUUCCUUGUGCCGUUGAUUUUGUUCUUGUA
........((((((((((((((((((..(((((..........)))))..))))...))))))))...(((((.....((.....))..)))))...........)))))). ( -29.40)
>DroEre_CAF1 10637 112 + 1
CCUUCGCCACGAGAUUGUCAGUCAUUUAUGUAUUACUUCUACUUUACACUCAUGUCUACUGAUAAUUAAGCAGCAACUGGUUUUUCCUUGUGCCAUUGAUUUUGUUCUUGUA
........(((((((((((((((((...((((............))))...)))...))))))))((((...(((...((.....))...)))..))))......)))))). ( -19.70)
>DroYak_CAF1 15135 112 + 1
CCUUCGCCUCGAGAUUGUUAGUCAUGUAUAUAUUUCUUCUACUUUACACUCAUGUCCACUGAUAAUUAAGCCCCAACUGGUUUUUCCUUGUGCCAUUGAUUUUGUUCUUGUA
.....((..(((((((((((((((((........................))))...))))))))).(((((......)))))...)))).))................... ( -14.06)
>consensus
CCUUCGCCGCAAGAUUGUCAGUCAUGUAUGUAAUUCUUCUACUUUACACUCAUGUCUACUGAUAAUUAAGCACCAACUGGUUUUUCCUUGUGCCAUUGAUUUUGUUCUUGUA
........((((((((((((((((((..(((((..........)))))..))))...))))))))........(((.((((..........))))))).......)))))). (-18.18 = -18.78 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:25 2006