Locus 4602

Sequence ID 3R_DroMel_CAF1
Location 12,103,838 – 12,103,953
Length 115
Max. P 0.523700
window7563

overview

Window 3

Location 12,103,838 – 12,103,953
Length 115
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 91.68
Mean single sequence MFE -25.54
Consensus MFE -18.34
Energy contribution -20.82
Covariance contribution 2.48
Combinations/Pair 1.14
Mean z-score -1.93
Structure conservation index 0.72
SVM decision value -0.02
SVM RNA-class probability 0.523700
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12103838 115 + 27905053
AAGCGGGAAAACAGAAAAACCAAUAUUGCGAAAAUUUCUUCUAAUUAAAUUAGAUUCUCGAUUCCCGUAAAGGAAACGAGGGAAAUGAAAGGUG-GGGAAUGCACGUGGGCGAAAG
..((((.............))....(..((...((((((((((((...))))))...(((.(((((.....(....)..))))).)))......-))))))...))..)))..... ( -23.52)
>DroSec_CAF1 9814 116 + 1
AAGCAGGAAAACAGAAAAACCAAUAUUGCGAAAAUUUCUUCUAAUUAAAUUAGAUUCUCGAUUUCCGUAAGGGAAACGAGGGAAAUGAAAGGUGAGGGAGUGCACGUGGGCGAAAG
..((.((............))....(..((...((((((((...((..(((...((((((.(((((....))))).)))))).)))..))...))))))))...))..)))..... ( -26.80)
>DroSim_CAF1 9758 115 + 1
AAGCAGGAAAACAGAAAAACCAAUAUUGCGAAAAUUUCUUCUAAUUAAAUUAGAUUCUCGAUUCCCGUAAGGGAAACGAGGGAAAUGAAAGGUG-GGGAGUGCACGUGGGCGAAAG
..((.(.....).......(((....((((....(..((((((((...))))))((((((.(((((....))))).))))))...........)-)..).))))..)))))..... ( -29.00)
>DroEre_CAF1 9515 115 + 1
AAACAGGAAAACAGAAAAACCAAUACUGCAAAAAUUUCUUCUAAUUAAAUUAGAUGCUCGAUUCCCGUAAGGGAAAAUUGGGAAAUGUAGGGAC-AGGAGUGUGCGUGGGCGAAAG
...................(((...(((((.........((((((...))))))..((((((((((....))))..))))))...)))))(.((-(....))).).)))....... ( -24.60)
>DroYak_CAF1 9599 115 + 1
AAGCAGGAAAACAGAAAAACCAAUAUUGCGAAAAUGUCUUCUAAUUAAAUUAGAUGCUCGAUUCCCGUAAGGGAAAGGAGGGAAAUAAAGGGUG-AGGAGUGCUCGUGGGCGAAAG
..((.((............))....(..(((....(((((((.(((...(((..(.(((..(((((....)))))..))).)...)))..))).-))))).)))))..)))..... ( -23.80)
>consensus
AAGCAGGAAAACAGAAAAACCAAUAUUGCGAAAAUUUCUUCUAAUUAAAUUAGAUUCUCGAUUCCCGUAAGGGAAACGAGGGAAAUGAAAGGUG_GGGAGUGCACGUGGGCGAAAG
..((.((............))....(..((...((((((((((((...))))))..((((.(((((....))))).))))...............))))))...))..)))..... (-18.34 = -20.82 +   2.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:20 2006