| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,087,369 – 12,087,488 |
| Length | 119 |
| Max. P | 0.500000 |
| Location | 12,087,369 – 12,087,488 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.23 |
| Mean single sequence MFE | -32.62 |
| Consensus MFE | -30.02 |
| Energy contribution | -30.86 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.92 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12087369 119 + 27905053 CGAUUAUGUACAGGCUGUUAAAUGCAUACACGUAACCGAUAUGCACUAUUUUGGUGUCUCGGCUGCUG-GUUGGUGGUCGUUAGUAAGAUAAAGCCCUGUGCGUACCAACUUAAAGUUAA ....((((((((((((......((((((..((....)).)))))).(((((((.((...((((..((.-...))..)))).)).))))))).)).))))))))))............... ( -34.30) >DroSec_CAF1 23973 119 + 1 CGAUUAUGUACAGGCUGUUAAAUGCAUACACGUAAUCGAUAUGCACUAUUUUGGUGUCUCGGCUGCUG-GUUGGUGGUCGUUAGUGAGAUAAAGCCCUGUGCGUACCAACUUAAAGUUAA ....((((((((((((......((((((..((....)).)))))).(((((((.((...((((..((.-...))..)))).)).))))))).)).))))))))))............... ( -33.90) >DroSim_CAF1 24132 120 + 1 CGAUUAUGUACAGGCUGUUAAAUGCAUACACGUAACCGAUAUGCACUAUUUUGGUGUCUCGGCUGCUGGGUUGGUGGUCGUUAGUAAGAUAAAGCCCUGUGCGUACCAACUUAAAGUUAA ....((((((((((((......((((((..((....)).)))))).(((((((.((...((((..((.....))..)))).)).))))))).)).))))))))))............... ( -34.30) >DroEre_CAF1 26003 119 + 1 CGAUUAUGUACAGGCUGUUAAAUGCAUACACGUAACCGAUAUGCACAUUUUUGGUGUCUCGGCUGCUG-AAUGGUGUCCGUUAGUAAGAUAAAGCCCUGUGCGUACCAACUUAAAGUUAA ....((((((((((((......(((...((.(((.((((.((((.((....)))))).)))).)))))-(((((...))))).)))......)).))))))))))............... ( -30.40) >DroYak_CAF1 26463 118 + 1 CGAUUAUGUACAGGCUGUUAAAUGCAUACACGUAACCGAUAUGCAC-UUUUUGGUGUCUCGGCUGCUG-GUUGGUGUCCAUUAGUAAGGUAAAGCCCUGUGCGUACCAACUUAAUGUUAA ....((((((((((((......(((......(((.((((...((((-(....))))).)))).)))((-(.......)))...)))......)).))))))))))............... ( -30.20) >consensus CGAUUAUGUACAGGCUGUUAAAUGCAUACACGUAACCGAUAUGCACUAUUUUGGUGUCUCGGCUGCUG_GUUGGUGGUCGUUAGUAAGAUAAAGCCCUGUGCGUACCAACUUAAAGUUAA ....((((((((((((......((((((..((....)).)))))).(((((((.((...((((((((.....)))))))).)).))))))).)).))))))))))............... (-30.02 = -30.86 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:10 2006