Locus 4594

Sequence ID 3R_DroMel_CAF1
Location 12,084,855 – 12,084,975
Length 120
Max. P 0.859593
window7546

overview

Window 6

Location 12,084,855 – 12,084,975
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.50
Mean single sequence MFE -53.74
Consensus MFE -47.68
Energy contribution -47.68
Covariance contribution -0.00
Combinations/Pair 1.05
Mean z-score -1.43
Structure conservation index 0.89
SVM decision value 0.82
SVM RNA-class probability 0.859593
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12084855 120 - 27905053
CCGAGGAGAUGGUCGACAGGGUGGUGAAUGUGGCGGUGGUGGAGCUGCUUCCGCAGGAACUGCUACUGCCGCCGCUGGCUUGUACGGUGGUGAAGCUUCCACUGAAUGCCAGCGUGGACC
..........((((.((..((((((....((((((((.((((((....))))))....)))))))).))))))((((((...(.((((((........)))))))..)))))))).)))) ( -58.00)
>DroSec_CAF1 21546 120 - 1
CCGAGGAGAUGGUGGACAGGGUGGUGAAUGUGGCGGUGGUGGAGCUGCUUCCGCAGGAACUGCUACUGCCGCCACUCGCUUGGACGGUGGUGAAGCUCCCACUGAAUGCCAGCGUGGACC
((((((((.((((((.(((((..((...(((((.((..(.....)..)).)))))...))..)).)))))))))))).))))).((((((.(.....)))))))....((.....))... ( -54.00)
>DroSim_CAF1 21734 120 - 1
CCGAGGAGAUGGUGGACAGGGUGGUGAAUGUGGCGGUGGUGGAGCUGCUUCCGCAGGAACUGCUACUGCCGCCACUCGCUUGGACGGUGGUGAAGCUCCCACUGAAUGCCAGCGUGGACC
((((((((.((((((.(((((..((...(((((.((..(.....)..)).)))))...))..)).)))))))))))).))))).((((((.(.....)))))))....((.....))... ( -54.00)
>DroEre_CAF1 23637 120 - 1
CCGAGGAAAUGGUGGACAGGGUGGUGAAUGUGGCGGUGGUGGAGCUGCUUCCGCAGGAACUGCUACUGCCGCCGCUCGCCUGCACGGUGGUGAAGCUCCCGCUGAAUGCCAACGUGGACC
(((.(....(((((..(((((..((....(((((((..((((((((((....))))...)).))))..)))))))(((((........))))).))..)).)))..))))).).)))... ( -50.00)
>DroYak_CAF1 24019 120 - 1
CCGAGGAAAUGGUGGACAGGGUGGUGAAUGUGGCGGUGGUGGAGCUGCUCCCGCAGGAACUGCUACUGCCGCCGCUCGCUUGCACGGUGGUGAAGCUCCCGCUGAAUGCCAGCGUGGAUC
..(((....((((((.(((((..((...(((((.((..(.....)..)).)))))...))..)).))))))))))))((((.(((....)))))))((((((((.....))))).))).. ( -52.70)
>consensus
CCGAGGAGAUGGUGGACAGGGUGGUGAAUGUGGCGGUGGUGGAGCUGCUUCCGCAGGAACUGCUACUGCCGCCGCUCGCUUGCACGGUGGUGAAGCUCCCACUGAAUGCCAGCGUGGACC
(((..(...(((((..(((((..((....(((((((..((((((((((....))))...)).))))..)))))))(((((........))))).))..)).)))..))))).).)))... (-47.68 = -47.68 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:59 2006