Locus 4593

Sequence ID 3R_DroMel_CAF1
Location 12,084,135 – 12,084,255
Length 120
Max. P 0.601831
window7545

overview

Window 5

Location 12,084,135 – 12,084,255
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.50
Mean single sequence MFE -51.18
Consensus MFE -49.24
Energy contribution -47.68
Covariance contribution -1.56
Combinations/Pair 1.21
Mean z-score -1.06
Structure conservation index 0.96
SVM decision value 0.14
SVM RNA-class probability 0.601831
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12084135 120 - 27905053
CCGCUGCCGCGCCCCUGUAGGCGGGUUGGCUGUCCAGACGCUCGUGGUAGCUAUGCGGCUGCGAAGGCUGCUGUUGCUGCUGGUGUUGGGGCUGGAAACUGAGUUGCUGGUAGUGAUCCA
.((((((((((((((....(((((.....)))))..((((((.(..(((((...((((((.....)))))).)))))..).))))))))))).(....)......)).)))))))..... ( -56.20)
>DroSec_CAF1 20826 120 - 1
CCGCUGCCACGCCCCUAUAGGCGGGUUGGCUGUCCAAACGCUCGUGGUAGCCAUGCGGUUGCGAAGGCUGCUGUUGCUGCUGGUGUUGGGGCUGGAAACUUAGUUGCUGGUAGUGAUCCA
.((((((((((((((....(((((.....)))))..((((((...((((((...(((((.((....)).))))).))))))))))))))))).(....)......).))))))))..... ( -51.60)
>DroSim_CAF1 21014 120 - 1
CCGCUGCCACGCCCCUAUAGGCGGGUUGGCUGUCCAAACGCUCGUGGUAGCCAUGCGGUUGCGAAGGCUGCUGUUGCUGCUGGUGUUGGGGCUGGAAACUUAGUUGCUGGUAGUGAUCCA
.((((((((((((((....(((((.....)))))..((((((...((((((...(((((.((....)).))))).))))))))))))))))).(....)......).))))))))..... ( -51.60)
>DroEre_CAF1 22917 120 - 1
CCGCUGGCACGCCCCUGUAGGCGGGCUGGCUCUCCAGACGCUCGUGGUAGCCAUGUGGUUGCGAAGGCUGCUGUUGUUGCUGGUGCUGGGGCUGGAAACUAAGUUGCUGGUAGUGAUCCA
..((..((.((((......)))).))..)).((((((.((((...((((((...(..((.((....)).))..).))))))))))))))))..(((.((((.........))))..))). ( -46.60)
>DroYak_CAF1 23302 120 - 1
CCGCUGCCACGCCCCUGUAGGCGGGCUGGCUCUCCAGACGCUCGUGGUAGCCAUGUGGUUGCGAAGGCUGCUGUUGUUGCUGGUGCUGGGGCUGGAAACUGAGUUGCUGGUAGUGAUCCA
.(((((((.((((......))))(((.((((((((((.(.((.(((.((((...(..((.((....)).))..)....)))).))).)).))))))....)))))))))))))))..... ( -49.90)
>consensus
CCGCUGCCACGCCCCUGUAGGCGGGUUGGCUGUCCAGACGCUCGUGGUAGCCAUGCGGUUGCGAAGGCUGCUGUUGCUGCUGGUGUUGGGGCUGGAAACUGAGUUGCUGGUAGUGAUCCA
.((((((((((((((.(((((((..((((....)))).))))...((((((...(((((.((....)).))))).))))))..))).))))).(....)......).))))))))..... (-49.24 = -47.68 +  -1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:57 2006