Locus 4590

Sequence ID	3R_DroMel_CAF1
Location	12,082,621 – 12,082,735
Length	114
Max. P	0.786618

overview

Window 9

Location	12,082,621 – 12,082,735
Length	114
Sequences	4
Columns	114
Reading direction	reverse
Mean pairwise identity	97.81
Mean single sequence MFE	-41.95
Consensus MFE	-40.76
Energy contribution	-41.45
Covariance contribution	0.69
Combinations/Pair	1.05
Mean z-score	-1.85
Structure conservation index	0.97
SVM decision value	0.57
SVM RNA-class probability	0.786618
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12082621 114 - 27905053
AAAACAAUGUGGUUGUUGUUGGACUCAACAGCUGGCUCCGAUGGCGAUUGCUGUUGCUGCUGCUGCUCCUCGAGCGACUCCAGGUAGUUGUUGUUGCUGAUGGCCCACUUGUUG
..(((((.((((..((..(..(...(((((((((....(((((((....)))))))(((..(.(((((...))))).)..))).)))))))))...)..)..))))))))))). ( -40.80)
>DroSec_CAF1 19318 114 - 1
AAAACAAUGUGGUUGUUGUUGGACUCAACAGCUGGCUCCGAUGGCGAUUGCUGCUGCUGUUGCUGCUCCUCGAGCGACUCCAGGUAGUUGUUGUUGCUGAUGGCCCACUUGUUG
..(((((.((((..((..(..(...(((((((((.((.....((((((.((....)).))))))((((...))))......)).)))))))))...)..)..))))))))))). ( -42.50)
>DroSim_CAF1 19506 114 - 1
AAAACAAUGUGGUUGUUGUUGGACUCAACAGCUGGCUCCGAUGGCGAUUGCUGCUGCUGUUGCUGCUCCUCGAGCGACUCCAGGUAGUUGUUGUUGCUGAUGGCCCACUUGUUG
..(((((.((((..((..(..(...(((((((((.((.....((((((.((....)).))))))((((...))))......)).)))))))))...)..)..))))))))))). ( -42.50)
>DroEre_CAF1 21412 114 - 1
AAACCAAUGUGGUUGUUGUUGGACUCAACAGCUGGCUCCGAUGGCGGUUGCUGCUGCUGUUGCUGCUCCUCGAGCGACUCCAGGUAGUUGUUGUUGUUGAUGGCCCACUUGUUG
....(((.((((..((..(..(...(((((((((((..((((((((((....))))))))))..)).(((.(((...))).))))))))))))...)..)..)))))))))... ( -42.00)
>consensus
AAAACAAUGUGGUUGUUGUUGGACUCAACAGCUGGCUCCGAUGGCGAUUGCUGCUGCUGUUGCUGCUCCUCGAGCGACUCCAGGUAGUUGUUGUUGCUGAUGGCCCACUUGUUG
..(((((.((((..((..(..(...(((((((((((..((((((((((....))))))))))..)).(((.(((...))).))))))))))))...)..)..))))))))))). (-40.76 = -41.45 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:51 2006