Locus 4583

Sequence ID	3R_DroMel_CAF1
Location	12,079,040 – 12,079,144
Length	104
Max. P	0.829543

overview

Window 5

Location	12,079,040 – 12,079,144
Length	104
Sequences	4
Columns	114
Reading direction	reverse
Mean pairwise identity	86.67
Mean single sequence MFE	-42.27
Consensus MFE	-31.14
Energy contribution	-31.95
Covariance contribution	0.81
Combinations/Pair	1.04
Mean z-score	-1.99
Structure conservation index	0.74
SVM decision value	0.71
SVM RNA-class probability	0.829543
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12079040 104 - 27905053
UCUGAAACUCCGG----CUUUAACUCUGGGCUGUGGGCUUUGGCUUUGGCU------UUGGGUCUGGCUACGACUGUGGCUCUGGCCCGAUCCACUACGGUCGGAGCGAGUCUG
...........((----(((...((((((.((((((((....))..(((..------(((((((.((((((....))))))..))))))).))))))))))))))).))))).. ( -41.50)
>DroSec_CAF1 15775 92 - 1
UCUGAAACUCCGG----CUUUAACUCUGGGCUGUGGGCUUUG------GCU------UUGGGUCUGGCUACGACUGUGGCUCUGGCCCGAUCCACUACGGUCGGAGCG------
.......(..(((----(((.......))))))..)((((((------(((------(((((((.((((((....))))))..)))))))........))))))))).------ ( -36.10)
>DroSim_CAF1 15959 92 - 1
UCUGAAACUCCGG----CUUUAACUCUGGGCUGUGGGCUUUG------GCU------UUGGGUCUGGCUACGACUGUGGCUCUGGCCCGAUCCACUACGGUCGGAGCG------
.......(..(((----(((.......))))))..)((((((------(((------(((((((.((((((....))))))..)))))))........))))))))).------ ( -36.10)
>DroEre_CAF1 17752 108 - 1
UCUGAAACUCCGGCUGGCUUUAACUCUGGGCUGUGGGCUUCGGCUUUGGCUGUGGGUCUGGGUCUGGCUACGACUGUAGCUCUGGCCCGAUCCACUCCGGUCGGAGCG------
.......((((((((((...........(((((.((((....)))))))))(((((((.(((((.((((((....))))))..)))))))))))).))))))))))..------ ( -55.40)
>consensus
UCUGAAACUCCGG____CUUUAACUCUGGGCUGUGGGCUUUG______GCU______UUGGGUCUGGCUACGACUGUGGCUCUGGCCCGAUCCACUACGGUCGGAGCG______
.......................((((((.(((((((((........))).......(((((((.((((((....))))))..)))))))....))))))))))))........ (-31.14 = -31.95 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:38 2006