Locus 4581

Sequence ID 3R_DroMel_CAF1
Location 12,077,900 – 12,078,019
Length 119
Max. P 0.545715
window7520

overview

Window 0

Location 12,077,900 – 12,078,019
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.05
Mean single sequence MFE -26.13
Consensus MFE -22.86
Energy contribution -22.78
Covariance contribution -0.08
Combinations/Pair 1.12
Mean z-score -1.19
Structure conservation index 0.87
SVM decision value 0.02
SVM RNA-class probability 0.545715
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12077900 119 + 27905053
AGUCGUGCGGCGAACUCCGUGGUGCGGCAACAUGAAAUGGCCGACGCAAAAUAUGCGCACAUCAAAAAAGUCUGCCUCAUACAACGCAACCCACA-AACUCCCCACCACCCCAAAAACCA
.((.(((.((.((.....((((((((.....((((...(((.((((((.....)))(.....)......))).)))))))....))))..)))).-...))))))).))........... ( -26.40)
>DroSec_CAF1 14648 119 + 1
AGUCGUGCGGCGAACUCCGUGGUGCGGCAACAUGAAAUGGCCGACGCAAAAUAUGCGCACAUCAAAAAAGUCUGCCUCAUACAACGCAACCCACA-AACUCCCCACCACCCCAAAAAGCA
.((.(((.((.((.....((((((((.....((((...(((.((((((.....)))(.....)......))).)))))))....))))..)))).-...))))))).))........... ( -26.40)
>DroSim_CAF1 14842 119 + 1
AGUCGUGCGGCGAACUCCGUGGUGCGGCAACAUGAAAUGGCCGACGCAAAAUAUGCGCACAUCAAAAAAGUCUGCCUCAUACAACGCAACCCACA-AACUCCCCACCACCCCAAAAAGCA
.((.(((.((.((.....((((((((.....((((...(((.((((((.....)))(.....)......))).)))))))....))))..)))).-...))))))).))........... ( -26.40)
>DroEre_CAF1 16586 119 + 1
AGUCGUGCGGCGAACUCCGUGGUGCGGCAACAUGAAAUGGUCGACGCAAAAUAUGCGCACGUCAAAAAAGUCUGCCACACACAACGCAACCCACAAAACUCC-GCCCAACCCAAAAAGCA
.....((.((((......((((((((....)......((((.((((((.....)))(.....)......))).))))........)))..)))).......)-)))))............ ( -24.52)
>DroYak_CAF1 16872 118 + 1
AGUCGUGCGGCGAACUCCGUGGUGCGGCAACAUGAAAUGGCCGACGCAAAAUAUGCGCACAUCAAAAAAGACUGCCACCUACAACGCAGCCCACG-AACUCC-ACCCAAUCCAAAAAGCA
..(((((.(((.......(((((.((((...........)))).((((.....))))................)))))..........)))))))-).....-................. ( -26.93)
>consensus
AGUCGUGCGGCGAACUCCGUGGUGCGGCAACAUGAAAUGGCCGACGCAAAAUAUGCGCACAUCAAAAAAGUCUGCCUCAUACAACGCAACCCACA_AACUCCCCACCACCCCAAAAAGCA
.((.(((.((((.(((...(((((((((...........)))).((((.....))))..)))))....))).)))).)))))...................................... (-22.86 = -22.78 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:33 2006