| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,074,413 – 12,074,530 |
| Length | 117 |
| Max. P | 0.634736 |
| Location | 12,074,413 – 12,074,530 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.34 |
| Mean single sequence MFE | -35.16 |
| Consensus MFE | -25.54 |
| Energy contribution | -24.78 |
| Covariance contribution | -0.76 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.634736 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12074413 117 - 27905053 UUAUAAAAUAACCUUAUUUUGCACAUGUACACGGGUUUUCGUUGUGCUGGUGUGUGUGUAAGCUCCAUCAGCU-CCACGGAGGGUUGGGUGAUUCCUACUCUUCCCGAGACACC--CUCU ...(((((((....)))))))...........((((((((((.(.(((((((.(.((....)).)))))))).-).))(((((..((((.....))))..))))).)))).)))--)... ( -35.40) >DroSec_CAF1 11031 119 - 1 UUAUAAAAUAACCUUAUUUUGCACAUGUACACGGGUAUUCGUUGUGCUGGUGUGUGUGUAAGCUCCAUCAGCU-CCACGUAGGGUUGGGUGAAUCCUCCUCUUCCCGAGACACCCCCUCU .........((((((((.((((((((..((((.(((((.....))))).))))))))))))(((.....))).-....))))))))(((((....(((........))).)))))..... ( -35.70) >DroSim_CAF1 11462 119 - 1 UUAUAAAAUAACCUUAUUUUGCACAUGUACACGGGUAUUCGUUGUGCUGGUGUGCGUGUAAGCUCCAUCAGCC-UCACGGAGGGUUGGGUGAAUCCUCCUCUUCCCGAGACACCCCCUCU ...(((((((....))))))).((((((((((.(((((.....))))).))))))))))..(((.....))).-....((((((...((((....(((........))).)))))))))) ( -36.80) >DroEre_CAF1 13011 118 - 1 UUAUAAAAUAACCUUAUUCUGCACAUAUACACGGGCUUUCGAUGUGCUAGUAUGUGUGUAAGCUCCAUCAGCCCCCACAAGGGGUUGGGUGAUUCGUCCUCUUCCUGAGAAACC--CUCU ..........(((......(((((((((((...(((.........))).)))))))))))........(((((((.....))))))))))........(((.....))).....--.... ( -32.90) >DroYak_CAF1 13272 118 - 1 UUAUAAAAUAACCUUAUUCUGCACAUAUACACGGGCUUUCGUUGUGCUUGUGUGUGUGUAAGCUCCAUCAGCCCCCACGGAGGGUUGGGCGAAUCUUCCUCUUCCCGAGACACC--CUCU ...............((((.((((((((((((((((.........))))))))))))))........((((((((....).)))))))))))))............(((.....--))). ( -35.00) >consensus UUAUAAAAUAACCUUAUUUUGCACAUGUACACGGGUUUUCGUUGUGCUGGUGUGUGUGUAAGCUCCAUCAGCC_CCACGGAGGGUUGGGUGAAUCCUCCUCUUCCCGAGACACC__CUCU .........((((((.......((((((((((.(((.........))).))))))))))..(((.....)))........))))))(((.((.......))..)))(((.......))). (-25.54 = -24.78 + -0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:09 2006