Locus 4575

Sequence ID 3R_DroMel_CAF1
Location 12,073,103 – 12,073,220
Length 117
Max. P 0.999821
window7493

overview

Window 3

Location 12,073,103 – 12,073,220
Length 117
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.46
Mean single sequence MFE -22.22
Consensus MFE -21.09
Energy contribution -21.09
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.36
Structure conservation index 0.95
SVM decision value 4.16
SVM RNA-class probability 0.999821
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12073103 117 + 27905053
C---AACAACAGCAACAGAAGCCACUACACGUGCAAUGUCCAACUACCAAUGCACUUCCACACGCACACCAUUAGCAUUAUUAAAUCGCCAGCCGCAAAUUUGCGGUUGCGUCACCUACU
.---.......((...((......))....(((((.((.........)).)))))........)).....................(((.(((((((....))))))))))......... ( -21.10)
>DroSec_CAF1 9634 111 + 1
C---AACA------ACAGAAGCCACUACACGUGCAAUGUCCAACUACCAAUGCACUUCCACACGCACACCAUUAGCAUUAUUAAAUCGCCAGCCGCAAAUUUGCGGUUGCGUCACCUACU
.---....------...((.((........(((((.((.........)).)))))........)).....................(((.(((((((....))))))))))))....... ( -21.09)
>DroSim_CAF1 10065 111 + 1
C---AACA------ACAGAAGCCACUACACGUGCAAUGUCCAACUACCAAUGCACUUCCACACGCACACCAUUAGCAUUAUUAAAUCGCCAGCCGCAAAUUUGCGGUUGCGUCACCUACU
.---....------...((.((........(((((.((.........)).)))))........)).....................(((.(((((((....))))))))))))....... ( -21.09)
>DroEre_CAF1 11630 111 + 1
C---AACA------ACAGAAGCCACUACACGUGCAAUGUCCAACUACCAAUGCACUUGCACACGCACACCAUUAGCAUUAUUAAAUCGCAAGCCGCAAAUUUGCGGUUGCGUCACCUACU
.---....------................((((((.((.((........)).))))))))((((.........(((((....))).)).(((((((....)))))))))))........ ( -23.90)
>DroYak_CAF1 11873 114 + 1
CAACAACA------ACAGAAGCCAUUACACGUGCAAUGUCCAACUACCAAUGCACUUGCACACGCACACCAUUAGCAUUAUUAAAUCGCAAGCCGCAAAUUUGCGGUUGCGUCACCUACU
........------................((((((.((.((........)).))))))))((((.........(((((....))).)).(((((((....)))))))))))........ ( -23.90)
>consensus
C___AACA______ACAGAAGCCACUACACGUGCAAUGUCCAACUACCAAUGCACUUCCACACGCACACCAUUAGCAUUAUUAAAUCGCCAGCCGCAAAUUUGCGGUUGCGUCACCUACU
.................((.((........(((((.((.........)).)))))........)).....................(((.(((((((....))))))))))))....... (-21.09 = -21.09 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:07 2006