Locus 4556

Sequence ID 3R_DroMel_CAF1
Location 12,060,419 – 12,060,526
Length 107
Max. P 0.548766
window7439

overview

Window 9

Location 12,060,419 – 12,060,526
Length 107
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 81.27
Mean single sequence MFE -22.80
Consensus MFE -17.55
Energy contribution -16.90
Covariance contribution -0.65
Combinations/Pair 1.32
Mean z-score -1.45
Structure conservation index 0.77
SVM decision value 0.03
SVM RNA-class probability 0.548766
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12060419 107 + 27905053
CAUAUCCACACUAAAAUCCACCGAAACCUGCAGCACCGUUUUACCCUAACCCGUGGAACGGGGUUCUUAUUUUCCUAAAUAUUUAGGAAUAUA-------------GAUUUAAUUUCUAA
.............(((((.............(((.(((((((((........))))))))).)))..(((.(((((((....))))))).)))-------------)))))......... ( -20.90)
>DroSim_CAF1 41699 107 + 1
CAUAUCCACACUAAAAUCCGCCGAAACCUGCAGCACUGUUUUACCCUAACCCGUGGAACGGGGUUCUUAUUUUGCUAAAUAUUUUGCAAAGUA-------------GCUUUAAUUUCUAA
......................((((..((.(((.(((((((((........)))))))))......((((((((..........))))))))-------------))).)).))))... ( -19.90)
>DroYak_CAF1 32051 120 + 1
CAUAUCCACACUAAAAUCCGCCGAAACCUGCAGCACUCUUUUGCUCUAACCCGUGGGACGGGGUUCAUAUUUUGUCGAAUAUUUGGCAAGCUAGUGCUGGAUCCUUGCUUUAAUUUCCAU
...((((((((((.........(((.((((.((((......))))....((....)).)))).)))....((((((((....)))))))).))))).))))).................. ( -27.60)
>consensus
CAUAUCCACACUAAAAUCCGCCGAAACCUGCAGCACUGUUUUACCCUAACCCGUGGAACGGGGUUCUUAUUUUGCUAAAUAUUUAGCAAAAUA_____________GCUUUAAUUUCUAA
......................((((...(.(((.(((((((((........))))))))).)))).(((((((((((....)))))))))))....................))))... (-17.55 = -16.90 +  -0.65)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:13 2006