| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,057,375 – 12,057,469 |
| Length | 94 |
| Max. P | 0.924216 |
| Location | 12,057,375 – 12,057,469 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 71.84 |
| Mean single sequence MFE | -25.40 |
| Consensus MFE | -16.79 |
| Energy contribution | -17.23 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.66 |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.924216 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12057375 94 - 27905053 G---CUGCUGUCUCCUCCUCUCUCU-----------------------UCGCUCGCCCGCGAUUAUUUUCGGGUUAUUAAACCAACCGCAACAACUCAGACGGCAAGCAACAACAGCCAC (---(((((((((............-----------------------((((......)))).........((((....))))..............))))))).)))............ ( -21.90) >DroSim_CAF1 38731 114 - 1 G---CUGCUGUCUCUCCCUCUCCUUCGAGCCAACUAUUGGCAUCUCUGUCGCUCGCCCGCGAUUAUUUUCGGGUUAUUAAACCAACCGCAACAACUCAGACGGCAAGCAC---AAGUCAC (---(((((((((............(((((((.....))))......(((((......))))).....)))((((....))))..............))))))).)))..---....... ( -30.30) >DroYak_CAF1 28701 104 - 1 GGCGUCGCUGGCUCUGCCGC--------------UAUUGGCAUCCCUGUCGCUCACCCGCGAUUAUUUUCGGGUUAUUAAACCAACCGCAACAACUCAGACAGCAAGCAACAACAGCC-- (((((((.((((......))--------------)).))))....(((((.........(((......)))((((....))))...............)))))............)))-- ( -24.00) >consensus G___CUGCUGUCUCUCCCUCUC__U_________UAUUGGCAUC_CUGUCGCUCGCCCGCGAUUAUUUUCGGGUUAUUAAACCAACCGCAACAACUCAGACGGCAAGCAACAACAGCCAC ......(((((((..................................(((((......)))))........((((....))))..............)))))))................ (-16.79 = -17.23 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:09 2006