| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,052,621 – 12,052,779 |
| Length | 158 |
| Max. P | 0.934881 |
| Location | 12,052,621 – 12,052,741 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 98.33 |
| Mean single sequence MFE | -28.30 |
| Consensus MFE | -26.77 |
| Energy contribution | -27.43 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.95 |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.934881 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12052621 120 - 27905053 UGGAUUCGCCGGUAAACGGCAAAGGAAACAAGCGCAUAAAGCGUAAAUGCCGAUAGAAGAAACUCAAGAAUCAAAACAAAGAUAGCGAAUGCACCUCACAUGUGUACUCAAAUGCAAUCA ..(((((((((.....))))...((......((((.....)))).....))................)))))........(((.((((.(((((.......))))).))....)).))). ( -27.90) >DroSim_CAF1 23982 120 - 1 UGGAUUCGCCGGUAAACGGCAAAGGAAACAAGCGCAUAAAGCGUAAAUGCCGAUAGAAGAAACUCAAGAAUCAAAACAAAGAUAGCGAAUGCACCUCACAUGUGUACUCAUAUGCAAUCA ((.((((((.......(((((..(....)..((((.....))))...))))).................(((........))).)))))).)).....((((((....))))))...... ( -29.30) >DroYak_CAF1 23752 120 - 1 UGGUUUCGCCGGUGAACGGCAAAGGAAACAAGCGCAUAAAGCGUAAAUGCCGAUAGAAGAAACUCAAGAAUCAAAACAAAGAUAGCGAAUGCACCUCACAUGUGUACUCAUAUGCAAUCA .((((((((((.....))))...((......((((.....)))).....)).......))))))................(((.((((.(((((.......))))).))....)).))). ( -27.70) >consensus UGGAUUCGCCGGUAAACGGCAAAGGAAACAAGCGCAUAAAGCGUAAAUGCCGAUAGAAGAAACUCAAGAAUCAAAACAAAGAUAGCGAAUGCACCUCACAUGUGUACUCAUAUGCAAUCA ((.((((((.......(((((..(....)..((((.....))))...))))).................(((........))).)))))).)).....((((((....))))))...... (-26.77 = -27.43 + 0.67)
| Location | 12,052,661 – 12,052,779 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.65 |
| Mean single sequence MFE | -33.20 |
| Consensus MFE | -28.13 |
| Energy contribution | -28.13 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.56 |
| Structure conservation index | 0.85 |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.908570 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12052661 118 - 27905053 UUGAACAUUUCCC--GGCCGUAGCCAAAUGACUUUUCAAUUGGAUUCGCCGGUAAACGGCAAAGGAAACAAGCGCAUAAAGCGUAAAUGCCGAUAGAAGAAACUCAAGAAUCAAAACAAA ((((...((((((--(((.(...((((.(((....))).))))...))))))....(((((..(....)..((((.....))))...)))))......)))).))))............. ( -32.80) >DroSim_CAF1 24022 118 - 1 UUGAACAUUUCCC--GGCCGUAGCCAAAUGACUUUUCAAUUGGAUUCGCCGGUAAACGGCAAAGGAAACAAGCGCAUAAAGCGUAAAUGCCGAUAGAAGAAACUCAAGAAUCAAAACAAA ((((...((((((--(((.(...((((.(((....))).))))...))))))....(((((..(....)..((((.....))))...)))))......)))).))))............. ( -32.80) >DroYak_CAF1 23792 120 - 1 UUGAGCAUUUCCCGUGGCCAUAGCCAAAUGACUUUUCAAUUGGUUUCGCCGGUGAACGGCAAAGGAAACAAGCGCAUAAAGCGUAAAUGCCGAUAGAAGAAACUCAAGAAUCAAAACAAA (((((...(((((..(((...((((((.(((....))).))))))..))))).)))(((((..(....)..((((.....))))...)))))..........)))))............. ( -34.00) >consensus UUGAACAUUUCCC__GGCCGUAGCCAAAUGACUUUUCAAUUGGAUUCGCCGGUAAACGGCAAAGGAAACAAGCGCAUAAAGCGUAAAUGCCGAUAGAAGAAACUCAAGAAUCAAAACAAA ((((...........(((....)))...(((.(((((.(((((....((((.....))))...(....)..((((.....)))).....))))).)))))...)))....))))...... (-28.13 = -28.13 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:08 2006