Locus 4551

Sequence ID 3R_DroMel_CAF1
Location 12,051,730 – 12,051,850
Length 120
Max. P 0.811512
window7432

overview

Window 2

Location 12,051,730 – 12,051,850
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 99.44
Mean single sequence MFE -45.27
Consensus MFE -45.25
Energy contribution -45.03
Covariance contribution -0.22
Combinations/Pair 1.02
Mean z-score -1.74
Structure conservation index 1.00
SVM decision value 0.65
SVM RNA-class probability 0.811512
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12051730 120 - 27905053
GUGGAAAAUUUACGUAGUUUUUGCUCGGGCUCUGUGGCUUUGGCCGAGCGCCUUUGGCGUCGUCGUCGCUGGUCGCUUGGCGUCUUGUUGUGCGAAGUGCAGAGUUCGUACUGAAUGCUU
(((((...)))))(((.((...(..(((((((((((.(((((((((((((((..(((((....)))))..)).))))))))..(.....)..))))))))))))))))..).)).))).. ( -43.80)
>DroSim_CAF1 23099 120 - 1
GUGGAAAAUUUACGUAGUUUUUGCUCGGGCUCUGUGGCUUUGGCCGAGCGCCUUUGGCGUCGUCGUCGCUGGUCGCUUGGCGUCUUGUUGUGCGAAGUGCAGAGUUCGUACUGAACGCUU
((((((((((.....)))))))(..(((((((((((.(((((((((((((((..(((((....)))))..)).))))))))..(.....)..))))))))))))))))..)....))).. ( -46.00)
>DroYak_CAF1 22872 120 - 1
GUGGAAAAUUUACGUAGUUUUUGCUCGGGCUCUGUGGCUUUGGCCGAGCGCCUUUGGCGUCGUCGUCGCUGGUCGCUUGGCGUCUUGUUGUGCGAAGUGCAGAGUUCGUACUGAACGCUU
((((((((((.....)))))))(..(((((((((((.(((((((((((((((..(((((....)))))..)).))))))))..(.....)..))))))))))))))))..)....))).. ( -46.00)
>consensus
GUGGAAAAUUUACGUAGUUUUUGCUCGGGCUCUGUGGCUUUGGCCGAGCGCCUUUGGCGUCGUCGUCGCUGGUCGCUUGGCGUCUUGUUGUGCGAAGUGCAGAGUUCGUACUGAACGCUU
((((((((((.....)))))))(..(((((((((((.(((((((((((((((..(((((....)))))..)).))))))))..(.....)..))))))))))))))))..)....))).. (-45.25 = -45.03 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:06 2006