Locus 4544

Sequence ID 3R_DroMel_CAF1
Location 12,044,691 – 12,044,784
Length 93
Max. P 0.983731
window7420

overview

Window 0

Location 12,044,691 – 12,044,784
Length 93
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 76.60
Mean single sequence MFE -27.89
Consensus MFE -18.87
Energy contribution -17.90
Covariance contribution -0.97
Combinations/Pair 1.41
Mean z-score -2.37
Structure conservation index 0.68
SVM decision value 1.95
SVM RNA-class probability 0.983731
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12044691 93 - 27905053
UCCGCUAAUUAGUAAUACCGCCGAAGUGGUGAACUCUACUUAACGUCAUUCU---------------------------UGUUGCGGCUUUUUAGCCGCAGAAACUAAGGCAAACCUGAU
...(((..(((((..((((((....)))))).....................---------------------------..((((((((....))))))))..))))))))......... ( -25.50)
>DroSec_CAF1 15919 93 - 1
UCCGCUAAUUAGCAAUGCCGCCAAAGUGGUGAACUCUACUUAACGCCAUUCU---------------------------UGUUGUGGCUUUUUAGCCGCAGAAACUAAGGCAAACCUUAU
...(((....)))..((((..((((((((((............))))))).)---------------------------))((((((((....)))))))).......))))........ ( -26.90)
>DroSim_CAF1 15913 93 - 1
UCCGCUAAUUAGCAAUGCCGCCAAAGUGGUGAACUCUACUUAACGCCAUUCU---------------------------UGUUGUGGCUUUUUAGCCGCAGAAACUAAGGCAAACCUGAU
...(((....)))..((((..((((((((((............))))))).)---------------------------))((((((((....)))))))).......))))........ ( -26.90)
>DroEre_CAF1 15235 93 - 1
UCAGCUAAUUAGCAAUACCGCCAAAGUGGUGAACUCUACUUAACGGCAUUCU---------------------------AAUUGUGGCUUUUUAGCCGCAAAAACUAAGACAAACCUGAU
((((..((((((.(((.(((...((((((......))))))..))).)))))---------------------------))))((((((....))))))................)))). ( -25.70)
>DroYak_CAF1 15511 93 - 1
UCGGCUAAUUAGCAAUACCGCCAAUGUGGCGAACUCCACUUAACGCCAUUCU---------------------------UGUUGUGGCUUUUUAGCCGCAGAAACUAAGACAAACCUGAU
.(((((((..(((..(((.((....((((((............))))))...---------------------------.)).))))))..)))))))(((..............))).. ( -24.74)
>DroAna_CAF1 14575 120 - 1
AUGCCUAAUUAGGGGCAACACCAAAGUGGUAAGUCCUACUUGGCCCUAGUCCGUGUGUAGGUAGUGCUCCUGCUCCUGCUCCUGCGGUCGCUUAACCGCAGAAAGUAAGACAAACCUGAU
.(((((......)))))..........(((..(((.(((((...............(((((.(((......))))))))..(((((((......))))))).))))).)))..))).... ( -37.60)
>consensus
UCCGCUAAUUAGCAAUACCGCCAAAGUGGUGAACUCUACUUAACGCCAUUCU___________________________UGUUGUGGCUUUUUAGCCGCAGAAACUAAGACAAACCUGAU
...(((....)))..........((((((......))))))........................................((((((((....))))))))................... (-18.87 = -17.90 +  -0.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:55 2006