Locus 4542

Sequence ID 3R_DroMel_CAF1
Location 12,043,126 – 12,043,222
Length 96
Max. P 0.511953
window7418

overview

Window 8

Location 12,043,126 – 12,043,222
Length 96
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 94.79
Mean single sequence MFE -19.70
Consensus MFE -17.55
Energy contribution -17.30
Covariance contribution -0.25
Combinations/Pair 1.12
Mean z-score -1.44
Structure conservation index 0.89
SVM decision value -0.04
SVM RNA-class probability 0.511953
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12043126 96 + 27905053
GCAAGAUUGUGAUAUCAGCAGAGAAUAUUUACUGUUUAUUUAACAGCAGUACGGACAAGAUCUCUGCAAUUGACGCAUAAAUUUGAAUUUUAAUUA
.((((.(((((...((((((((((.....(((((((........)))))))(......).)))))))...)))..))))).))))........... ( -21.90)
>DroSec_CAF1 14335 96 + 1
GCAAGAUUGUGAUAUCAGCAGAGAAUAUUUACUGUUUAUUUAACAGCAGUACGGAAAAGAUCUCUGCAAUUGACGCAUAAAUUUGAAUUUUAAUUA
.((((.(((((...((((((((((.....(((((((........)))))))(......).)))))))...)))..))))).))))........... ( -21.90)
>DroSim_CAF1 14337 96 + 1
GCAAGAUUGUGAUAUCAGCAGAGAAUAUUUACUGUUUAUUUAACAGCAGUACGGACAAGAUCUGUGCAAUUGACGCAUAAAUUUGAAUUUUAAUUA
.((((.(((((...((((.............(((((.....)))))..(((((((.....)))))))..))))..))))).))))........... ( -18.90)
>DroEre_CAF1 13660 96 + 1
ACAAGAUUGUGAUAUCAGCAGAGGAUAUUUACGGUUUAUUUAGCUGCAGAACGGACAAGAUCUCUGCAAUUGACGCAUAAAUUUAAAUUGUAAUUA
......(((((...((((((((((...(((.(((((.....))))).))).(......).)))))))...)))..)))))................ ( -16.10)
>consensus
GCAAGAUUGUGAUAUCAGCAGAGAAUAUUUACUGUUUAUUUAACAGCAGUACGGACAAGAUCUCUGCAAUUGACGCAUAAAUUUGAAUUUUAAUUA
.((((.(((((...((((((((((.......(((((.....))))).....(......).)))))))...)))..))))).))))........... (-17.55 = -17.30 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:53 2006