Locus 4535

Sequence ID 3R_DroMel_CAF1
Location 12,032,804 – 12,032,903
Length 99
Max. P 0.738255
window7403

overview

Window 3

Location 12,032,804 – 12,032,903
Length 99
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 79.96
Mean single sequence MFE -20.76
Consensus MFE -10.69
Energy contribution -10.97
Covariance contribution 0.28
Combinations/Pair 1.12
Mean z-score -2.10
Structure conservation index 0.51
SVM decision value 0.44
SVM RNA-class probability 0.738255
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12032804 99 - 27905053
CAACA---ACACAAACCUCCUAUAUGAGUGCGCCCCGUACAU----ACAUACAUAUAUGUACGAAUGUAUAUU--UAUAUAGAGUCGCAGCAACACGCGCACUGGAUU
.....---.......((..(((((((((((..(..(((((((----(........))))))))...)..))))--)))))))((((((........))).)))))... ( -26.40)
>DroSec_CAF1 4175 101 - 1
CAACA---ACACAAACCUCCUA--UGAGUGCGCCCCGUACAUGCAUACAUACAUAUAUGUUCGAAUGUAUAUU--UAUAUAGAGUCGCAGCAACACGCGCACUGGAUU
.....---.........(((..--..(((((((...((...(((..(((((....)))))..((.(((((...--.)))))...)))))...))..)))))))))).. ( -21.10)
>DroEre_CAF1 3322 87 - 1
CAACA---ACAGAAACCUCCUAUAUGAGUGCGCCCCGUACAUA----------------UACGAAUGUAUAUU--UAUAUAGAGUCGCAGCAACACGCGCACUGGAUU
.....---.......((..(((((((((((((...)))))(((----------------(((....)))))))--)))))))((((((........))).)))))... ( -19.90)
>DroYak_CAF1 3522 89 - 1
CAACA---ACACAAACCUCCUAUAUGAGUGCGCCACGUACAUA----------------UACGAAUGUAUAUUUUUAUAUAGAGUCGCAGCAACACGCGCACUGGAUU
.....---.......((..(((((((((((((...)))))(((----------------(((....))))))..))))))))((((((........))).)))))... ( -19.90)
>DroAna_CAF1 3141 89 - 1
CAAAAACAAUAACAACAACCUAUAUGAAUGUGGC-CGUACAUA----------------UAGAAGCGUAUAUU--UAUAUAGAGUCGCCGCAACACGCGCACUGGAAU
...................(((((((((((((((-........----------------.....)).))))))--)))))))((((((........))).)))..... ( -16.52)
>consensus
CAACA___ACACAAACCUCCUAUAUGAGUGCGCCCCGUACAUA________________UACGAAUGUAUAUU__UAUAUAGAGUCGCAGCAACACGCGCACUGGAUU
........................(.(((((((...((((((......................)))))).............((....)).....))))))).)... (-10.69 = -10.97 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:39 2006