| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,031,187 – 12,031,305 |
| Length | 118 |
| Max. P | 0.678734 |
| Location | 12,031,187 – 12,031,305 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 85.35 |
| Mean single sequence MFE | -33.70 |
| Consensus MFE | -22.72 |
| Energy contribution | -23.40 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.678734 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12031187 118 - 27905053 CAUCGCCACCU-UUGGCUGUUAUUUUGAACUAUACACAGCUGACCGCUAACGUCCUCUUUUGGCCUAUGAUUGAACUAGAUAGUUUCUUUUGUAUUCCGCAAGGGACAAUAUGCGGCGA ..(((((....-(..((((((((........))).)))))..)..((....((((.(((.(((..((..(..(((((....)).)))..)..))..))).))))))).....))))))) ( -34.30) >DroSec_CAF1 2555 117 - 1 CAUCGCCACCUUUUGGCUGUUAUU-UGAACUAUGCACAGCUGACCGCUGACGUCCUCUUUUGGCCUACAAUUGAACUACAUAGUUUAUUUUGUAUUCCGAAAGAG-CAGUAUGUGGCGA ..(((((((...(..((((((((.-......))).)))))..)..((((.....(((((((((..(((((.((((((....))))))..)))))..)))))))))-))))..))))))) ( -42.00) >DroSim_CAF1 2566 112 - 1 CAUCGCCACCUUUUGGAUGUUAU--UGAACUAUGCACAGCUAUCGUCUGGCGUCCUCUU-UGACCUAUAA-UGAACUAGAUAGCUUAU-UUGUAUUCCGCAAGGG-CAGUAUGUGG-GA ..((.((((...(((........--......(((((.(((((((.(((((.(((.....-.))))))...-.))....)))))))...-.)))))(((....)))-)))...))))-)) ( -24.80) >consensus CAUCGCCACCUUUUGGCUGUUAUU_UGAACUAUGCACAGCUGACCGCUGACGUCCUCUUUUGGCCUAUAAUUGAACUAGAUAGUUUAUUUUGUAUUCCGCAAGGG_CAGUAUGUGGCGA ..(((((((....((((((((((........))).))))))).......((...(((((.(((..(((((..(((((....)))))...)))))..))).)))))...))..))))))) (-22.72 = -23.40 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:38 2006