| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,028,383 – 12,028,484 |
| Length | 101 |
| Max. P | 0.651738 |
| Location | 12,028,383 – 12,028,484 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 85.10 |
| Mean single sequence MFE | -29.54 |
| Consensus MFE | -18.89 |
| Energy contribution | -20.22 |
| Covariance contribution | 1.33 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.651738 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12028383 101 + 27905053 CAACGCUGAUAAGACCUCUCAAAAUGAUAAGCAUAACGCCAGGCUCUUAUCAGCACGGGAUGGAGACGCCUGGCAACGUAACAGCUGACCUUUCAAAAGUC ..(((((((((((((((......(((.....)))......))).)))))))))).((((.((....)))))).....))...................... ( -27.00) >DroSim_CAF1 6673 101 + 1 CACCGCUGAUAAGACCUCUCAAAAUGAUAAGCACAACGCCAGGCUCUUAUCAGCACGGGAUGGAGACGCCUGGCAACGUAACAGCUGACCUUUCAAAAGUC ....(((((((((((((.((.....))...((.....)).))).)))))))))).((((.((....))))))............................. ( -26.50) >DroEre_CAF1 6629 100 + 1 CACCGCUGAUAAGACCUCUCAAAAUGAUAAGCAUAACGCCAGG-UCUUAUCAGCACGGGAUGGAGACGCCUGCCAACGUAACAGCUGACCUUUUGAAAGUC ....(((((((((((((......(((.....)))......)))-)))))))))).((((.((....))))))............................. ( -29.80) >DroYak_CAF1 6628 100 + 1 CAGCGCUGAUAAGACCUCUCAAAAUGAUAAGCAUAACGCCAGU-UCUUAUCAGCAUGGGAUGGAGACGCCUGGCAACGUAACAGCUGACCUCUCCAAAGUC ((((((((((((((.((......(((.....)))......)).-))))))))))..(((.((....)))))(....)......)))).............. ( -27.90) >DroAna_CAF1 6681 86 + 1 CGCAGCUGAUAAGACUGCUCAAAGUGAUAAG-------------UCUUAUCAGCG-GGGAGGGAGACGCCUGGCAACGUAGCAGCCAACCUUCCCG-GGUC ....((((((((((((..((.....))..))-------------))))))))))(-((((((....)...((((.........))))..)))))).-.... ( -36.50) >consensus CACCGCUGAUAAGACCUCUCAAAAUGAUAAGCAUAACGCCAGG_UCUUAUCAGCACGGGAUGGAGACGCCUGGCAACGUAACAGCUGACCUUUCAAAAGUC ....(((((((((((((.((.....))...((.....)).))).)))))))))).((((.((....))))))............................. (-18.89 = -20.22 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:37 2006