Locus 4528

Sequence ID 3R_DroMel_CAF1
Location 12,019,834 – 12,019,945
Length 111
Max. P 0.720109
window7391

overview

Window 1

Location 12,019,834 – 12,019,945
Length 111
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 91.14
Mean single sequence MFE -24.00
Consensus MFE -18.35
Energy contribution -18.48
Covariance contribution 0.12
Combinations/Pair 1.10
Mean z-score -1.92
Structure conservation index 0.76
SVM decision value 0.40
SVM RNA-class probability 0.720109
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12019834 111 - 27905053
UCACUUUUCUUUUAUGGCUAUUUUAUUUUUUGUUGACUUUCACCUCAACGCAGGUCAGCAGAGCAACAACAGUAAGCGCCGUAGCUAACAAUAAAAACAAAGGCCAAAAAA
..............(((((.(((((((((((((((((((.(........).))))))))))))........((.(((......))).))))))))).....)))))..... ( -24.20)
>DroSec_CAF1 124716 111 - 1
UCACUUUCCUUUAAUGGCCAUUUUCUUUUUUGUUGACUUUCACCUCAACGCAGGCGAGCAAAGCAACAACAGCAAGCGCCGUAGCUAACAAUAAAAACAAAGGCCAAAAAA
..............(((((............(((((........)))))((.((((.((............))...))))...))................)))))..... ( -22.90)
>DroSim_CAF1 125017 111 - 1
UCACUUUCCUUUUAUGGCCAUUUUCUUUUUUGUUGACUUUCACCUCAACGCAGGCGAGCAGAGCAACAACAGCAAGCGGCGUAGCUAACAAUAAAAACAAAGGCCAAAAAA
..............(((((..........((((((.(((((.(((......))).))...))))))))).....(((......)))...............)))))..... ( -22.90)
>DroYak_CAF1 127758 107 - 1
UCACUUUCCUUUUAUGGCCAUUU----UUUUGUUGACUUUUACCUCGACGCAGAGGAGUAGAGCAAAAACAGCAAGCGGGGUAGCUAACAAUAAAAACAAAGGCCAAAAAA
..............(((((.(((----((((((((....((((((((((........))...((.......))...))))))))....))))))))).)).)))))..... ( -26.00)
>consensus
UCACUUUCCUUUUAUGGCCAUUUUCUUUUUUGUUGACUUUCACCUCAACGCAGGCGAGCAGAGCAACAACAGCAAGCGCCGUAGCUAACAAUAAAAACAAAGGCCAAAAAA
..............(((((..........((((((.((((...(((.........))).)))))))))).....(((......)))...............)))))..... (-18.35 = -18.48 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:28 2006