| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,015,957 – 12,016,076 |
| Length | 119 |
| Max. P | 0.996725 |
| Location | 12,015,957 – 12,016,076 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.53 |
| Mean single sequence MFE | -20.77 |
| Consensus MFE | -19.28 |
| Energy contribution | -18.40 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.93 |
| SVM decision value | 2.74 |
| SVM RNA-class probability | 0.996725 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12015957 119 - 27905053 UUUCGAGUGUUUUUUGCAGCAGAAUGGUAAUCAGAAUGCUCUCGGCAAUUCUUUAUUGAACGAC-CGUUCAAUAAAUUUCACAAAAGGAAAUGUUAUCAGCGGGUAUUCUUAAAAUAACU .(((...(((.....)))...)))........(((((((((...((......(((((((((...-.)))))))))(((((.......))))).......))))))))))).......... ( -22.80) >DroSec_CAF1 120842 91 - 1 UU-----------------------------CGGAAUGCUUUCGGAAAUUCUUUAUUGAACAACCCGUUCAGUAAAUUUCACCAAAGGAAAUGUUAUCAGCGGGUAUUCUUAAAAUACCU ..-----------------------------.((((((((..(.((......(((((((((.....)))))))))(((((.......)))))....)).)..)))))))).......... ( -19.40) >DroSim_CAF1 121124 91 - 1 UU-----------------------------CAGAAUGCUUUCGGUAAUUUUUUAUUGAACAACCCGUUCAGUAAAUUUCACCAAAGGAAAUGUUAUCAGCGGGUAUUUUAAAAAUACCU ..-----------------------------......(((...((((((...(((((((((.....)))))))))(((((.......))))))))))))))(((((((.....))))))) ( -20.10) >consensus UU_____________________________CAGAAUGCUUUCGGAAAUUCUUUAUUGAACAACCCGUUCAGUAAAUUUCACCAAAGGAAAUGUUAUCAGCGGGUAUUCUUAAAAUACCU ................................(((((((((.(.........(((((((((.....)))))))))(((((.......))))).......).))))))))).......... (-19.28 = -18.40 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:21 2006