Locus 4522

Sequence ID 3R_DroMel_CAF1
Location 12,013,715 – 12,013,819
Length 104
Max. P 0.999894
window7382

overview

Window 2

Location 12,013,715 – 12,013,819
Length 104
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 97.88
Mean single sequence MFE -35.18
Consensus MFE -34.04
Energy contribution -34.20
Covariance contribution 0.16
Combinations/Pair 1.04
Mean z-score -2.87
Structure conservation index 0.97
SVM decision value 4.42
SVM RNA-class probability 0.999894
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12013715 104 - 27905053
CAAACAUUCUGCUCCCACGCAAGAGCAGCAGGAACUGUGGCAAAAACAGCUGCUGCAGGAUCAACGAGGUGGGAGUGGAUUCGAGGACUUUAAAACACGAGCCA
.......((..(((((((......(((((((...((((.......))))))))))).(......)...)))))))..)).....((.(((........))))). ( -37.00)
>DroSec_CAF1 119036 104 - 1
CAAACAUUCUGCUCCCACGCAAGAGCAGCAGGAACUGUGGCAAAAACAGCUGCUGCAGGAUCAACGAGGUGGGAGUGGAUUCGAAGACUUUAAAACACGAGCCA
.......((..(((((((......(((((((...((((.......))))))))))).(......)...)))))))..))......................... ( -34.30)
>DroSim_CAF1 119267 104 - 1
CAAACAUUCUGCUCCCACGCAAGAGCAGCAGGAACUGUGGCAAAAACAGCUGCUGCAGGAUCAACGAGGUGGGAGUGGAUUCGAGGACUUUAAAACACGAGCCA
.......((..(((((((......(((((((...((((.......))))))))))).(......)...)))))))..)).....((.(((........))))). ( -37.00)
>DroEre_CAF1 118825 104 - 1
CAAACAUUCUGCUCCCACGCAAGAGCAGCAGGAAUUAUGGCAAAAACAGCUGCUGCAGGAUCAACGAGGUGGGAGUGGAUUCGAGGACUUUAAAACACGAGCCA
.......((..(((((((......(((((((......((.......)).))))))).(......)...)))))))..)).....((.(((........))))). ( -32.60)
>DroYak_CAF1 121963 104 - 1
CAAGCAUUCUGCUCCCACGCAAUAGCAGCAGGAAUUGUGGCAAAAACAGCUGCUGCAGGAUCAACGAGGUGGGAGUGGAUUCGAGGACUUUAAAACACGAGCCA
.......((..(((((((......(((((((...((((.......))))))))))).(......)...)))))))..)).....((.(((........))))). ( -35.00)
>consensus
CAAACAUUCUGCUCCCACGCAAGAGCAGCAGGAACUGUGGCAAAAACAGCUGCUGCAGGAUCAACGAGGUGGGAGUGGAUUCGAGGACUUUAAAACACGAGCCA
.......((..(((((((......(((((((...((((.......))))))))))).(......)...)))))))..)).....((.(((........))))). (-34.04 = -34.20 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:19 2006