| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,004,055 – 12,004,161 |
| Length | 106 |
| Max. P | 0.931761 |
| Location | 12,004,055 – 12,004,161 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 80.67 |
| Mean single sequence MFE | -35.12 |
| Consensus MFE | -22.65 |
| Energy contribution | -23.40 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.71 |
| Structure conservation index | 0.64 |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.931761 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12004055 106 + 27905053 CCCACCCCUUGGGCCAACCCUUUUUGGCCACCGC------CUGCAUGGGUUCUCU-GCUCUCCGUUGCAGGUGGAAUUUUGGCCUUCUCAACAUCGGUGGCCAUGUUCAUGUC .(((((....(((....))).....(((((((((------(((((.((((.....-)))).....))))))))).....)))))...........)))))............. ( -38.40) >DroVir_CAF1 125815 95 + 1 -------CUCU----AACACU---CUAUCUUUUG-G---CUCGCUCUCUUUCUAUACCGCUGUGGCACAGGUGGAAUUUUGGCCUUCUCAACAUCGGUGGCCAUGUUCAUGUC -------....----((((.(---((((((....-(---(.(((.................)))))..)))))))....(((((.((........)).)))))))))...... ( -19.33) >DroSec_CAF1 109486 106 + 1 GCCCCCCCUUUGGCCAACCCUUUUUGGCCACCGC------CUGCAUGGGUUCUCU-GCUCUCCGUUGCAGGUGGAAUUUUGGCCUUCUCAACAUCGGUGGCCAUGUUCAUGUC ..........(((((((......))))))).(((------(((((.((((.....-)))).....))))))))((((..(((((.((........)).))))).))))..... ( -38.60) >DroSim_CAF1 109788 104 + 1 AC--CCGCUUUGGCCAACCCUUUUUGGCCACCGC------CUGCAUGGGUUCUCU-GCUCUCCGUUGCAGGUGGAAUUUUGGCCUUCUCAACAUCGGUGGCCAUGUUCAUGUC ..--......(((((((......))))))).(((------(((((.((((.....-)))).....))))))))((((..(((((.((........)).))))).))))..... ( -38.60) >DroEre_CAF1 109382 103 + 1 A--CCCCUUUUGGCCA-ACCUUUUUGGCCACCGC------CUGCAUGGGUUCUGU-GCUCUCCGUUGCAGGUGGAAUUUUGGCCUUCUCAACAUCGGUGGCCAUGUUCAUGUC .--.......((((((-(.....))))))).(((------(((((.((((.....-)))).....))))))))((((..(((((.((........)).))))).))))..... ( -38.40) >DroYak_CAF1 112428 110 + 1 AC-CCCCUUUUGGCCA-CCCUUUUUGGCCAACAUGGGUUUUGGCAUGGGUUCUCU-GCUCUCCGUUGCAGGUGGAAUUUUGGCCUUCUCAACAUCGGUGGCCAUGUUCAUGUC ..-.(((..(((((((-.......)))))))...)))....((((((((((((((-((........))))..)))))..(((((.((........)).)))))...))))))) ( -37.40) >consensus AC_CCCCCUUUGGCCAACCCUUUUUGGCCACCGC______CUGCAUGGGUUCUCU_GCUCUCCGUUGCAGGUGGAAUUUUGGCCUUCUCAACAUCGGUGGCCAUGUUCAUGUC ...........(((((........)))))...........(((((((((...........))))).))))(((((....(((((.((........)).)))))..)))))... (-22.65 = -23.40 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:17 2006