Locus 452

Sequence ID 3R_DroMel_CAF1
Location 1,724,370 – 1,724,471
Length 101
Max. P 0.805064
window731

overview

Window 1

Location 1,724,370 – 1,724,471
Length 101
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 75.88
Mean single sequence MFE -20.94
Consensus MFE -4.08
Energy contribution -3.92
Covariance contribution -0.16
Combinations/Pair 1.45
Mean z-score -1.80
Structure conservation index 0.19
SVM decision value 0.63
SVM RNA-class probability 0.805064
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1724370 101 + 27905053
GAAAUGAGAUGCCACAUAUUUUUUGGUUUGGUUGGCAUCUUGUGGGGAGAAAGUUCUAUCAGAGAACGCAAUAGAAUACUAAUUGUCUUUUU-CAUAUAGAA
.....(((((((((((.(((....))).))..)))))))))(((..(((...(((((.....)))))(((((((....)).))))).)))..-)))...... ( -23.80)
>DroSec_CAF1 33571 93 + 1
GAAAUAAGAUUCCACAUAUUUU--------GUUGGUAUCUUGUAGGGCGAAAGUUCUAUCAGAGAGCGCAAUCGAAUACUAAUUGUGUAUUU-CAUAUAAAA
((.(((((((.(((((.....)--------).))).)))))))(((((....))))).)).(((((((((((.........))))))).)))-)........ ( -23.70)
>DroSim_CAF1 34621 93 + 1
GAAAUGAGAUUCCACAUAUUUU--------GUUGGUAUCUUGUAGGGCGAAAGUUCUAUCAGAGAGCGCAAUCGAAUACUAAUUGUUUAUUU-CAUAUAGAA
((((((((........(((((.--------((((((.(((.(((((((....))))))).)))..)).)))).))))).......)))))))-)........ ( -24.66)
>DroEre_CAF1 33210 81 + 1
-----------CCACACAUUUU--------GUUGGUAUCUUGUAAGGAGA-AGAUCUGUCAGGAAUGGCAAAUGAGUAGUAAUUAUUUGUUU-CAUAUAAAC
-----------(((.((.....--------)))))..(((((...(((..-...)))..)))))(((((((((((.......))))))))..-)))...... ( -13.50)
>DroYak_CAF1 33359 94 + 1
GAAAUGAGAUUCCAUAUAUUUU--------GUUCGUUUCUUGUAGAGAGAAAGUUCUAUCAGCAGAAGCAAACGAAUACUAAUUAUUCAUUUGCUUAAAAAC
((((((((..............--------.))))))))((((.((.(((....))).)).))))(((((((.(((((.....))))).)))))))...... ( -19.06)
>consensus
GAAAUGAGAUUCCACAUAUUUU________GUUGGUAUCUUGUAGGGAGAAAGUUCUAUCAGAGAACGCAAUCGAAUACUAAUUGUUUAUUU_CAUAUAAAA
..................................((.(((.((((((......)))))).)))....))................................. ( -4.08 =  -3.92 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:30 2006