| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,986,288 – 11,986,382 |
| Length | 94 |
| Max. P | 0.994098 |
| Location | 11,986,288 – 11,986,382 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 90.11 |
| Mean single sequence MFE | -20.70 |
| Consensus MFE | -16.58 |
| Energy contribution | -16.46 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.75 |
| Structure conservation index | 0.80 |
| SVM decision value | 2.45 |
| SVM RNA-class probability | 0.994098 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11986288 94 - 27905053 CAGGAAUACCCAUCCUACCGAGAAAUACUCAAGUGGUCAAACAUUUAACCACUGUCAAUCAAAGAUCCACUCUCGCAUAGGGUAUAUCCAAUUU ..(((((((((.......(((((........((((((.((....)).))))))(((.......)))....)))))....)))))).)))..... ( -22.40) >DroSec_CAF1 91811 94 - 1 GAGGAAUGCCCAUCCCACCGAGAAAUAUCCAAGUGGUCAAACAUUUAACCACUGUCAAUCAAAGAUCCACUCUCGCAUAGGGUAUUUCCAAUUU (.(((((((((.......(((((........((((((.((....)).))))))(((.......)))....)))))....))))))))))..... ( -22.60) >DroSim_CAF1 90870 94 - 1 GAGGAAUGCCCAUCCUACCGAGAAAUACACAAGUGGUCAAACAUUUAACCACUGUCAAUCAAAUAUCCACUUUCGCAUAGGGUAUUUCCAAUUU (.(((((((((.......(((((........((((((.((....)).))))))(.....)..........)))))....))))))))))..... ( -18.40) >DroEre_CAF1 91777 94 - 1 CAGGAAAACUCAUUCUACCGAGUAAUACUGAAGUGGUCAAACAUUUAACCACUGUCACUCAAAGCUAUACUUUCGCAUAGGGUAUUUCCAAUUU ..(((((((((........((((.((.....((((((.((....)).)))))))).))))...((.........))...)))).)))))..... ( -19.10) >DroYak_CAF1 94372 94 - 1 GAGGAAAACUCAUUCUACCGAGAAAUACUCAAGUGGUCAAACAUUUAACCACUGUCAAUCAAAGCUAUACUUUCGCAUAGGGUAUUUCCCAUUU (((.....)))........(.(((((((((.((((((.((....)).))))))..........((.........))...))))))))).).... ( -21.00) >consensus GAGGAAUACCCAUCCUACCGAGAAAUACUCAAGUGGUCAAACAUUUAACCACUGUCAAUCAAAGAUCCACUUUCGCAUAGGGUAUUUCCAAUUU ..(((((((((.......(((((........((((((.((....)).))))))(.....)..........)))))....)))))).)))..... (-16.58 = -16.46 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:11 2006