Locus 4513

Sequence ID 3R_DroMel_CAF1
Location 11,985,919 – 11,986,023
Length 104
Max. P 0.554433
window7373

overview

Window 3

Location 11,985,919 – 11,986,023
Length 104
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 76.02
Mean single sequence MFE -25.39
Consensus MFE -13.40
Energy contribution -13.73
Covariance contribution 0.33
Combinations/Pair 1.05
Mean z-score -1.66
Structure conservation index 0.53
SVM decision value 0.04
SVM RNA-class probability 0.554433
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11985919 104 + 27905053
CUUGCCACUGAUUGGAAGCGCAUAAAAGUAGCAAAUCAGUGCGCACUUUGAAAUGGAAAUUCUAAUCAAAAAGGCGCGCGACCCCACAA-UAGAGGGGUGGGACU---
...(((..(((((((((.(.(((.(((((.(((......)))..)))))...))))...)))))))))....)))...(.(((((....-....))))).)....--- ( -31.70)
>DroVir_CAF1 104721 91 + 1
-UGUCGACUGAUUGGAAGCGCAUAAAAGUAGCAAAUCAGUGCGCACUUUGAAAUUGAAAUUGUAAUCAAAA-GGCACU------CACAA-UG----UGGAAAGC----
-((((...((((((.((...((..(((((.(((......)))..))))).....))...)).))))))...-)))).(------(((..-.)----))).....---- ( -17.20)
>DroGri_CAF1 102082 90 + 1
-CAACGACUGAUUGGAAGCGCAUAAAAGUAGCAAAUCAGUGCGCACUUUGAAAUUGAAAUUGUAAUCAA-A-GGCGCU------CUCAA-UG----UGGUAUGU----
-..((.((..((((..(((((...(((((.(((......)))..)))))....((((........))))-.-.)))))------..)))-))----).))....---- ( -22.50)
>DroEre_CAF1 91386 104 + 1
CUUGCCACUGAUUGGAAGCGCAUAAAAGUAGCAAAUCAGUGCGCACUUUGAAAUGGAAAUUCUAAUCAAAAAGGCGCGCGACCCCACAG-UAGAGGUGAUGGGUG---
..(((.(((((((.(..((........))..).)))))))((((..(((((..(((.....))).)))))...)))))))(((((((..-.....)))..)))).--- ( -27.80)
>DroMoj_CAF1 99387 95 + 1
-UAACGACUGAUUGGAAGCACAUGAAAGUAGCAAAUCAGUGCGCACUUUGAAAUUGAAAUUGUAAUCAAAA-GGCGCU------CACAG-UG----UGGCAGGGGAAA
-.....(((((((....((((......)).)).)))))))((((..(((((..............))))).-.))))(------(((..-.)----)))......... ( -17.94)
>DroAna_CAF1 113520 102 + 1
GCUGCCACUGAUUGGAAGCGUAUAAAAGUAGCAAAUCAGUGCUCACUUUGAAAUGGAAAUUCUAAUCAAAAAGG---GCGGUCUGGCUUCGAGAGGGGCUAAGUA---
((((((..(((((((((.(((...(((((((((......)))).)))))...)))....))))))))).....)---))))).(((((((....)))))))....--- ( -35.20)
>consensus
_UUGCCACUGAUUGGAAGCGCAUAAAAGUAGCAAAUCAGUGCGCACUUUGAAAUGGAAAUUCUAAUCAAAA_GGCGCG______CACAA_UA____UGGUAGGU____
......(((((((.(..((........))..).)))))))((((..(((((...(......)...)))))...))))............................... (-13.40 = -13.73 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:10 2006