Locus 4510

Sequence ID 3R_DroMel_CAF1
Location 11,964,579 – 11,964,669
Length 90
Max. P 0.999948
window7368

overview

Window 8

Location 11,964,579 – 11,964,669
Length 90
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 72.16
Mean single sequence MFE -31.82
Consensus MFE -17.43
Energy contribution -16.50
Covariance contribution -0.94
Combinations/Pair 1.33
Mean z-score -3.77
Structure conservation index 0.55
SVM decision value 4.77
SVM RNA-class probability 0.999948
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11964579 90 - 27905053
ACGCUUCAUGUCCAUGUUGAUUGAAACCGAAAUUGAUAUUGAUGUUGGAGUUCGAGC-----UUGAGUUAGU----------GCUGAUGUGGAUGUGGAAGCGGC--------
.(((((((((((((((((..(((((.((((.(((......))).))))..)))))((-----(......)))----------...))))))))))).))))))..-------- ( -27.90)
>DroSec_CAF1 68960 84 - 1
ACGCUUCAUGUCCAUGUUGAUUGAAACCGAAAUUGAUAUUGAUGUUGAAGUUUGAGU-----UGGAGUUGAU----------GUGG------AUGUGGAAGCGGC--------
.((((((((((((((((..(((..(((((((.(..(((....)))..)..)))).))-----)..)))..))----------))))------)))).))))))..-------- ( -31.00)
>DroEre_CAF1 69381 84 - 1
ACGCUCCAUGUCCAUGUUGAUUGAAACCGAAAUUGAUACUGAUGUUAGAGCUGGAGU-----UUGAGUUGAU----------------GUGGAUGUGGAAGCGAC--------
.((((((((((((((((..(((.(((((.(..((...((....))..))..).).))-----)).)))..))----------------)))))))))).))))..-------- ( -32.70)
>DroAna_CAF1 89614 113 - 1
ACGCUUCAUGUCCAUGUUGAUUGAAACCGAAAUUGAUAUUGAUGUUGAUGUUGAUGUGGCGGCUGUGUCAGUCCCAGUGUCUAUGGAUGUGGAUGUGGAAGUGGAGUUUGCUG
.(((((((((((((((((.((.((.((....((..(((((......)))))..)).(((.(((((...)))))))))).)).)).))))))))))).)))))).......... ( -35.70)
>consensus
ACGCUUCAUGUCCAUGUUGAUUGAAACCGAAAUUGAUAUUGAUGUUGAAGUUGGAGU_____UUGAGUUAAU__________GUGG__GUGGAUGUGGAAGCGGC________
.((((((((((((((((..(((........)))..)))......((((..(.............)..))))..................))))))))).)))).......... (-17.43 = -16.50 +  -0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:06 2006