| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,961,462 – 11,961,553 |
| Length | 91 |
| Max. P | 0.752935 |
| Location | 11,961,462 – 11,961,553 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 86.16 |
| Mean single sequence MFE | -22.23 |
| Consensus MFE | -15.14 |
| Energy contribution | -15.70 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.752935 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11961462 91 + 27905053 UCACCCCUUUUAUGUGUUUCUUUGGCAGCGGGAAAGCCCAUGCCCAUGAUGCCCAUGCCCACAAAGCGAAGAAAAGGAGGGAAAACAAACA ((.((((((((...(((((....((((..(((....))).))))((((.....))))......)))))...)))))).))))......... ( -25.00) >DroSec_CAF1 65944 80 + 1 UCACCCCUUUUAUUUUAUUCUUUGGCAGCGGGAAAGCCCAUGCC---------CAUGCCCACCAAGCGAAGAAAAGGAGGGAAAACAAA-- ....(((((((......((((((((((..(((....))).))))---------...((.......)))))))).)))))))........-- ( -20.60) >DroSim_CAF1 65966 80 + 1 UCACCCCUUUUAUGUGAUUCUUUGGCAGCGGGAAAGCCCAUGCC---------CAUGCCCACAAAGCGAAGAAAAGGAGGGAAAACAAA-- ....(((((((......((((((((((..(((....))).))))---------...((.......)))))))).)))))))........-- ( -20.60) >DroEre_CAF1 66292 74 + 1 UCACCCCUUUUAUGUGAUUCUUUGGCAGCGGGAAAGCCCAU---------------GCCCACGAAGUGAAGAAAAGGAGGUAAAACAAA-- ..(((((((((......(((...((((..(((....))).)---------------)))...)))......)))))).)))........-- ( -22.70) >consensus UCACCCCUUUUAUGUGAUUCUUUGGCAGCGGGAAAGCCCAUGCC_________CAUGCCCACAAAGCGAAGAAAAGGAGGGAAAACAAA__ ...((((((((............((((..(((....))).))))............((.......))....)))))).))........... (-15.14 = -15.70 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:05 2006