Locus 4506

Sequence ID 3R_DroMel_CAF1
Location 11,956,708 – 11,956,801
Length 93
Max. P 0.617070
window7363

overview

Window 3

Location 11,956,708 – 11,956,801
Length 93
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 82.18
Mean single sequence MFE -22.60
Consensus MFE -16.61
Energy contribution -17.58
Covariance contribution 0.97
Combinations/Pair 1.23
Mean z-score -1.51
Structure conservation index 0.73
SVM decision value 0.17
SVM RNA-class probability 0.617070
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11956708 93 - 27905053
UCACUUUCAGCU------GACUGAAGCCGCAGCUUCCUGCCCCCUU-ACCCCUUC-----U--UCUCGCCCCCCGUCCCCUGCCCGGGUGCUCAUUAAAUGUGAAUU
((((((((((..------..))))))..((((....))))......-........-----.--....((..((((.........)))).)).........))))... ( -17.00)
>DroSec_CAF1 61206 93 - 1
UCACUUUCAGCU------GGCUGAAGCCGCAGCUUCCUGCCCCUUU-ACCCCCUC-----U--GCGCACCCGCCGUCCCCUGCCCGGGGGCUCAUUAAAUGUGAAUU
((((........------(((.(((((....)))))..))).....-........-----.--(((....))).((((((.....)))))).........))))... ( -26.50)
>DroSim_CAF1 61299 93 - 1
UCACUUUCAGCU------GGCUGAAGCCGCAGCUUCCUGCCCCUUU-ACCCCUUC-----U--GCACACCCGCCGUCCCCUGCCCGGGGGCUCAUUAAAUGUGAAUU
((((...(((..------((.(((((..((((....))))..))))-).))...)-----)--)..........((((((.....)))))).........))))... ( -26.10)
>DroEre_CAF1 61567 93 - 1
UCACUUUCAGCU------AGCUCAAGCCGCAGCUUCCUUCCCCUUU-ACCCCUUC-----U--UCAUGCCCCCUGUCUCCUGCCCGGGGGCUCAUUAAAUGUGAAUU
((((....((((------.((.......))))))............-........-----.--....((((((.(.(....).).)))))).........))))... ( -21.70)
>DroYak_CAF1 64317 93 - 1
UCACUUUCAGCU------AGCUGAAGCCGCAGCUUCCUGCCCCUUU-GCCCCUUC-----C--UCGCGCCCCCCGUCUGCUGCCCGGGGGCUCAUUAAAUGUGAAUU
((((...(((..------(((((......)))))..))).......-........-----.--..(.((((((.(.(....).).)))))).).......))))... ( -27.10)
>DroAna_CAF1 81898 105 - 1
UCACUUUCAGCCAUCCACGACUCAGACCGCAGCUUCCUGCCCCGUUUGCCCCGCCCCCUUUUAGCCAAAUCGCC--CCUCCGCCCAUGGGCUCAUUAAAUGUGAAUU
((((.............((...(((((.((((....))))...)))))...)).........((((.....((.--.....)).....))))........))))... ( -17.20)
>consensus
UCACUUUCAGCU______GGCUGAAGCCGCAGCUUCCUGCCCCUUU_ACCCCUUC_____U__GCACACCCCCCGUCCCCUGCCCGGGGGCUCAUUAAAUGUGAAUU
((((((((((((......))))))))..((((....))))..................................((((((.....)))))).........))))... (-16.61 = -17.58 +   0.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:01 2006