Locus 4505

Sequence ID	3R_DroMel_CAF1
Location	11,948,569 – 11,948,661
Length	92
Max. P	0.815732

overview

Window 2

Location	11,948,569 – 11,948,661
Length	92
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	92.15
Mean single sequence MFE	-35.20
Consensus MFE	-31.86
Energy contribution	-32.34
Covariance contribution	0.48
Combinations/Pair	1.10
Mean z-score	-1.32
Structure conservation index	0.91
SVM decision value	0.66
SVM RNA-class probability	0.815732
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11948569 92 - 27905053
AGGGCGUGGUCCGGCAGUCGGCUGCAGUCUGUUGCAGUAGCAGUUGCAUUUCGCAGCUCCCGGCUGAAGGAAAAUCGGAUGAUGUCACGG-CG
..(((((.(((((((((((((((((((....))))))....((((((.....)))))).)))))))........)))))).)))))....-.. ( -37.10)
>DroSec_CAF1 53036 93 - 1
AGGGCGUGGUCCGGCAGUCGGCUGCAGUCUGUUGCAGUAGUAGUUGCAUUUCGCAGCUCCCGGCUGAAGGAAAAACGGAUGAUGUCACGGGGG
..(((((.(((((.(((((((((((((....))))))....((((((.....)))))).))))))).........))))).)))))....... ( -37.40)
>DroSim_CAF1 53144 93 - 1
AGGGCGUGGUCAGGCAGUCGGCUGCAGUCUGUUGCAGUAGCAGUUGCAUUUCGCAGCUCCCGGCUGAAGGAAAAACGGAUGAUGUCACGGGGG
..(((((.(((...(((((((((((((....))))))....((((((.....)))))).)))))))..(......).))).)))))....... ( -32.40)
>DroEre_CAF1 53392 93 - 1
AGGGCGUGGUCCGGCAGUCGGUUGCAUUCGGUUGCAGUAGCAGAUGUAUUUUGCAGCUCCCGGCUGAAGGAAGAACGGAUGAUGUCACGGGGG
..(((((.(((((.(((((((.((((......))))((.(((((.....))))).))..))))))).........))))).)))))....... ( -34.80)
>DroYak_CAF1 54284 93 - 1
AGGGCGUGGUCCAGCAGUCUGUUGCAAUCCGUUGCAGUAGCAGUUGCAUUUUGCAGCUCCCGGCUGAAGGAAAUGCGGAUGAUGUCACGGGGG
..(((((.(((((((.(.(((((((((....)))))))))).)))(((((((.((((.....))))...))))))))))).)))))....... ( -34.30)
>consensus
AGGGCGUGGUCCGGCAGUCGGCUGCAGUCUGUUGCAGUAGCAGUUGCAUUUCGCAGCUCCCGGCUGAAGGAAAAACGGAUGAUGUCACGGGGG
..(((((.(((((.(((((((((((((....))))))....((((((.....)))))).))))))).........))))).)))))....... (-31.86 = -32.34 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:00 2006