Locus 4504

Sequence ID 3R_DroMel_CAF1
Location 11,947,008 – 11,947,102
Length 94
Max. P 0.609449
window7361

overview

Window 1

Location 11,947,008 – 11,947,102
Length 94
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 81.10
Mean single sequence MFE -30.38
Consensus MFE -20.32
Energy contribution -21.45
Covariance contribution 1.13
Combinations/Pair 1.16
Mean z-score -1.50
Structure conservation index 0.67
SVM decision value 0.15
SVM RNA-class probability 0.609449
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11947008 94 - 27905053
CCAUCACUCAACGCCACUCUGGGCAAUUAGCCGAGUGAAAUUCAACACUCGCCAGUGGUACCAUUGUCCAAAUGGGGCUGGGUUUGGCCAGGUG------
..............(((.((((.((((((((((((((........)))))(((...))).(((((.....)))))))))))..))).)))))))------ ( -31.80)
>DroVir_CAF1 62445 87 - 1
UCAUCA-------------GCAGCAAUUAGCCGAGUGAAAUUCAACACUAGCAUGUGGGUCCAUUGUCCAAAUGGAGCACUCUUCGGCGGCAUCGUAAAA
......-------------...((.....((((((.((.......(((......)))(.((((((.....)))))).)..)))))))).))......... ( -23.10)
>DroSec_CAF1 51503 94 - 1
CCAUCACUCAACGCCACUCUGGGCAAUUAGCCGAGUGAAAUUCAACACUCGCCAGUGGUACCAUUGUCCAAAUGGGGCUGGGUUUGGCCAGGUG------
..............(((.((((.((((((((((((((........)))))(((...))).(((((.....)))))))))))..))).)))))))------ ( -31.80)
>DroSim_CAF1 51585 94 - 1
CCAUCACUCAACGCCACUCUGGGCAAUUAGCCGAGUGAAAUUCAACACUCGCCAGUGGUACCAUUGUCCAAAUGGGGCUGGGUUUGGCCAGGUG------
..............(((.((((.((((((((((((((........)))))(((...))).(((((.....)))))))))))..))).)))))))------ ( -31.80)
>DroEre_CAF1 51824 94 - 1
CCAUCACUCAACGCCACUCUGGGCAAUUAGCCGAGUGAAAUUCAACACUCGCCAGUGGUACCAUUGUCCAAAUGGGGCUGGGUUUGGCCAGGUG------
..............(((.((((.((((((((((((((........)))))(((...))).(((((.....)))))))))))..))).)))))))------ ( -31.80)
>DroAna_CAF1 71924 84 - 1
GCAUCAUUCAACGCCAG-CCGGGCAAUUAGCCGGGUGAAAUUCAACACUCGCCGGUGGUACCAUUGUCCAAAUGGGG---------GCCUGGCG------
...........((((((-((((((.....))((((((........)))))))))))(((.(((((.....)))))..---------))))))))------ ( -32.00)
>consensus
CCAUCACUCAACGCCACUCUGGGCAAUUAGCCGAGUGAAAUUCAACACUCGCCAGUGGUACCAUUGUCCAAAUGGGGCUGGGUUUGGCCAGGUG______
...........((((...((((((.....))((((((........)))))))))).....(((((.....)))))((((......)))).))))...... (-20.32 = -21.45 +   1.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:59 2006