Locus 4502

Sequence ID 3R_DroMel_CAF1
Location 11,939,454 – 11,939,554
Length 100
Max. P 0.742471
window7359

overview

Window 9

Location 11,939,454 – 11,939,554
Length 100
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 92.09
Mean single sequence MFE -25.22
Consensus MFE -20.36
Energy contribution -21.80
Covariance contribution 1.44
Combinations/Pair 1.04
Mean z-score -1.56
Structure conservation index 0.81
SVM decision value 0.45
SVM RNA-class probability 0.742471
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11939454 100 - 27905053
UAAUAAGCAGGC----------CUUAUCUAUGGGCUAGCUAAUAAUACCAGGACGGAACCUAACACAGUCUUGGCUUUUAAUAGCCCACCAUUUAAUGUAAGCCAUUUCG
.........(((----------.((((..((((....((((.(((..(((((((.............)))))))...))).))))...)))).....)))))))...... ( -24.12)
>DroSec_CAF1 44141 110 - 1
UAAUAACCAGGCCGUCAAUGGUCUUAUCUAUGGGCCAGCUAAUAAUACCAGGACGGAACCUAACACAGUCUUGGCUUUUAAUAGCCCACCAUUUAAUGUAAGCCAUUUCG
.........(((...((.((((((.......))))))((((.(((..(((((((.............)))))))...))).))))...........))...)))...... ( -26.52)
>DroSim_CAF1 44105 110 - 1
UAAUAACCAGGCCGUCAAUGAUCUUAUCUAUGGGCCAGCUAAUAAUACCAGGACGGAACCUAACACAGUCUUGGCUUUUAAUAGCCCACCAUUUAAUGUAAGCCAUUUCG
.........(((...((.(((........((((....((((.(((..(((((((.............)))))))...))).))))...))))))).))...)))...... ( -22.32)
>DroEre_CAF1 44114 110 - 1
UAAUUACCAGUCCGUCAAUGGUCUUCUCUAUGGGCUAGCUAAUAAUACCAAGACGGAACCUAACACAGUCUUGGCAUGUAAUAGCCCACCAUUUAAUGUAAGCCAUUUCG
............((..(((((.((((..(((((((((..((...((.(((((((.............))))))).)).)).))))))).....))..).)))))))).)) ( -25.32)
>DroYak_CAF1 44853 110 - 1
UAAUAACCAGGCCGUCAAUGGUCUUAUCUAUGGGCUAGCUAAUAAUACCAGGACGGAACCUAACGCAGUCUUGGCAGUUAAUAGCCCACCAUUUAAUGUAAGCCAUUUCG
.........((((((.((((((.........((((((..((((....(((((((.............)))))))..)))).))))))))))))..)))...)))...... ( -27.82)
>consensus
UAAUAACCAGGCCGUCAAUGGUCUUAUCUAUGGGCUAGCUAAUAAUACCAGGACGGAACCUAACACAGUCUUGGCUUUUAAUAGCCCACCAUUUAAUGUAAGCCAUUUCG
................(((((.(((((..((((....((((.(((..(((((((.............)))))))...))).))))...)))).....))))))))))... (-20.36 = -21.80 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:57 2006