| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,927,502 – 11,927,609 |
| Length | 107 |
| Max. P | 0.807889 |
| Location | 11,927,502 – 11,927,609 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.51 |
| Mean single sequence MFE | -31.79 |
| Consensus MFE | -22.83 |
| Energy contribution | -23.00 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.34 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.807889 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11927502 107 + 27905053 -UUAUCUC-CUUG-----------UAGACUUUGGAGAAUUUUGAGUUCCUCAAGGUGCUCGGCAAGGGCACCUUUGGUAAGGUUAUUUUGUGUCGCGAGAAGGCUACCGCCAAGCUGUAC -...((((-(...-----------........)))))...(((((...)))))(((((((.....)))))))((((((..(((..(((((.....)))))..)))...))))))...... ( -31.70) >DroVir_CAF1 40339 107 + 1 -UUCUUUU-UUAA-----------UAGACCCUUGAGAACUUUGAGUUCCUCAAGGUGCUCGGCAAGGGCACAUUCGGAAAAGUGAUCCUGUGCCGCGAGAAAGCGACUGCUAAAUUGUAC -(((((..-....-----------.((..((((((((((.....))).)))))))..))((((((((((((..........))).)))).))))).)))))(((....)))......... ( -30.20) >DroGri_CAF1 40169 119 + 1 UUUGUUUU-UCAAUGCACAAUACACAGACACUGGAGAACUUUGAGUUCCUCAAAGUGCUCGGCAAGGGCACCUUCGGCAAGGUGAUCCUGUGCCGCGAGAAGGCCACAGCUAGAUUGUAC ........-.......(((((............(((.((((((((...)))))))).)))(((...(((..(((((((((((....))).))))).)))...)))...)))..))))).. ( -36.20) >DroWil_CAF1 36059 107 + 1 --UAUAUUUUACA-----------UAGACUCUGGAGAACUUUGAGUUCCUCAAAGUGCUGGGUAAGGGCACGUUUGGCAAGGUGAUCCUGUGUCGUGAAAAAUCCACAGCCAAAUUGUAC --....((((((.-----------((((((.((..((((.....))))..)).))).))).))))))(((.(((((((.(((....))).....(((.......))).)))))))))).. ( -29.50) >DroMoj_CAF1 36695 99 + 1 ------AU-U--------------UAGACUCUUGAAAACUUUGAAUUCCUUAAGGUGCUCGGCAAGGGCACCUUUGGCAAGGUAAUUCUCUGCCGCGAGAAGGCUACUGCCAGAUUGUAU ------..-.--------------.....(((((........((((((((((((((((((.....)))))))))....)))).))))).......))))).(((....)))......... ( -30.76) >DroAna_CAF1 49894 107 + 1 -UUAUCUC-UUUA-----------CAGACACUGGAAAACUUUGAGUUCCUCAAGGUGCUCGGCAAGGGAACCUUCGGUAAGGUUAUCCUGUGUCGCGAGAAGGCCACUGCCAAGCUGUAC -...((((-....-----------..(((((.(((.(((((((....((..(((((.(((.....))).))))).))))))))).))).)))))..)))).(((....)))......... ( -32.40) >consensus _UUAUCUU_UUAA___________UAGACUCUGGAGAACUUUGAGUUCCUCAAGGUGCUCGGCAAGGGCACCUUCGGCAAGGUGAUCCUGUGCCGCGAGAAGGCCACUGCCAAAUUGUAC .................................(((.((((((((...)))))))).)))((((((((((((((....)))))).)))).))))((((...(((....)))...)))).. (-22.83 = -23.00 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:54 2006